Hb_002636_070

Information

Type -
Description -
Location Contig2636: 81830-86303
Sequence    

Annotation

kegg
ID tcc:TCM_011417
description Armadillo/beta-catenin-like repeat family protein, putative
nr
ID XP_012080482.1
description PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
swissprot
ID Q9CAA7
description Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1
trembl
ID A0A061EAX1
description Armadillo/beta-catenin-like repeat family protein, putative OS=Theobroma cacao GN=TCM_011417 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27513: 81801-82166 , PASA_asmbl_27514: 82446-82627 , PASA_asmbl_27516: 83354-83907 , PASA_asmbl_27517: 84411-84633 , PASA_asmbl_27518: 85086-85530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_070 0.0 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
2 Hb_029223_010 0.0812452345 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
3 Hb_000680_130 0.0874007327 - - beta-galactosidase, putative [Ricinus communis]
4 Hb_002713_060 0.088578655 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
5 Hb_000705_040 0.0893520149 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000270_640 0.0902684821 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
7 Hb_027337_130 0.0931337159 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
8 Hb_000033_010 0.0976336891 - - Protein MLO, putative [Ricinus communis]
9 Hb_008461_070 0.0995220305 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
10 Hb_162676_010 0.1016240459 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003145_010 0.1053258965 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
12 Hb_002615_080 0.1076546068 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
13 Hb_000373_010 0.1124156871 - - ATP binding protein, putative [Ricinus communis]
14 Hb_016924_010 0.1128709799 - - conserved hypothetical protein [Ricinus communis]
15 Hb_022693_080 0.1136894851 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
16 Hb_125961_010 0.1139098036 - - ATP binding protein, putative [Ricinus communis]
17 Hb_003058_170 0.1147449487 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
18 Hb_005057_030 0.1151504295 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
19 Hb_000968_010 0.117608158 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
20 Hb_001046_030 0.1178306102 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002636_070 Hb_002636_070 Hb_029223_010 Hb_029223_010 Hb_002636_070--Hb_029223_010 Hb_000680_130 Hb_000680_130 Hb_002636_070--Hb_000680_130 Hb_002713_060 Hb_002713_060 Hb_002636_070--Hb_002713_060 Hb_000705_040 Hb_000705_040 Hb_002636_070--Hb_000705_040 Hb_000270_640 Hb_000270_640 Hb_002636_070--Hb_000270_640 Hb_027337_130 Hb_027337_130 Hb_002636_070--Hb_027337_130 Hb_016924_010 Hb_016924_010 Hb_029223_010--Hb_016924_010 Hb_029223_010--Hb_000705_040 Hb_003142_080 Hb_003142_080 Hb_029223_010--Hb_003142_080 Hb_029223_010--Hb_000270_640 Hb_000836_030 Hb_000836_030 Hb_029223_010--Hb_000836_030 Hb_000373_010 Hb_000373_010 Hb_000680_130--Hb_000373_010 Hb_000680_130--Hb_000705_040 Hb_002155_020 Hb_002155_020 Hb_000680_130--Hb_002155_020 Hb_032695_010 Hb_032695_010 Hb_000680_130--Hb_032695_010 Hb_001579_060 Hb_001579_060 Hb_000680_130--Hb_001579_060 Hb_005057_030 Hb_005057_030 Hb_002713_060--Hb_005057_030 Hb_173387_010 Hb_173387_010 Hb_002713_060--Hb_173387_010 Hb_010222_060 Hb_010222_060 Hb_002713_060--Hb_010222_060 Hb_000120_480 Hb_000120_480 Hb_002713_060--Hb_000120_480 Hb_009522_020 Hb_009522_020 Hb_002713_060--Hb_009522_020 Hb_000705_040--Hb_000270_640 Hb_002943_020 Hb_002943_020 Hb_000705_040--Hb_002943_020 Hb_001248_070 Hb_001248_070 Hb_000705_040--Hb_001248_070 Hb_002073_150 Hb_002073_150 Hb_000705_040--Hb_002073_150 Hb_001541_280 Hb_001541_280 Hb_000270_640--Hb_001541_280 Hb_000968_010 Hb_000968_010 Hb_000270_640--Hb_000968_010 Hb_000270_640--Hb_000373_010 Hb_004979_070 Hb_004979_070 Hb_000270_640--Hb_004979_070 Hb_188075_010 Hb_188075_010 Hb_027337_130--Hb_188075_010 Hb_000574_340 Hb_000574_340 Hb_027337_130--Hb_000574_340 Hb_004291_050 Hb_004291_050 Hb_027337_130--Hb_004291_050 Hb_008461_070 Hb_008461_070 Hb_027337_130--Hb_008461_070 Hb_000033_010 Hb_000033_010 Hb_027337_130--Hb_000033_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0169016 1.66425 2.12801 2.50107 0.0127816 0.0485142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0309784 0.036566 0.0232911 0.957559 5.97434

CAGE analysis