Hb_000574_340

Information

Type -
Description -
Location Contig574: 321359-322278
Sequence    

Annotation

kegg
ID rcu:RCOM_0901420
description hypothetical protein
nr
ID XP_002517674.1
description hypothetical protein RCOM_0901420 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVA5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0901420 PE=4 SV=1
Gene Ontology
ID GO:0005829
description clustered mitochondria protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49556: 309679-322135 , PASA_asmbl_49558: 322152-322355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_340 0.0 - - hypothetical protein RCOM_0901420 [Ricinus communis]
2 Hb_003440_080 0.0660869814 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_003643_080 0.0927113626 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
4 Hb_012796_030 0.0940926818 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_027337_130 0.0962599378 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
6 Hb_005092_090 0.0983095012 - - cold regulated protein [Manihot esculenta]
7 Hb_188075_010 0.0983614801 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
8 Hb_006588_020 0.1145250382 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_162676_010 0.1158429455 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000644_010 0.1177785607 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
11 Hb_000027_230 0.1211479234 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_004994_200 0.1211886524 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
13 Hb_004979_080 0.1222463489 - - kinase, putative [Ricinus communis]
14 Hb_003226_230 0.1293508854 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
15 Hb_006787_070 0.1294635506 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
16 Hb_001836_010 0.1297061221 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
17 Hb_125961_010 0.1323504026 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002155_020 0.1333327437 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
19 Hb_008461_070 0.1333378632 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
20 Hb_001345_040 0.1336757456 - - hypothetical protein VITISV_015004 [Vitis vinifera]

Gene co-expression network

sample Hb_000574_340 Hb_000574_340 Hb_003440_080 Hb_003440_080 Hb_000574_340--Hb_003440_080 Hb_003643_080 Hb_003643_080 Hb_000574_340--Hb_003643_080 Hb_012796_030 Hb_012796_030 Hb_000574_340--Hb_012796_030 Hb_027337_130 Hb_027337_130 Hb_000574_340--Hb_027337_130 Hb_005092_090 Hb_005092_090 Hb_000574_340--Hb_005092_090 Hb_188075_010 Hb_188075_010 Hb_000574_340--Hb_188075_010 Hb_003440_080--Hb_012796_030 Hb_000289_090 Hb_000289_090 Hb_003440_080--Hb_000289_090 Hb_000951_070 Hb_000951_070 Hb_003440_080--Hb_000951_070 Hb_119832_010 Hb_119832_010 Hb_003440_080--Hb_119832_010 Hb_003440_080--Hb_027337_130 Hb_000644_010 Hb_000644_010 Hb_003643_080--Hb_000644_010 Hb_002155_020 Hb_002155_020 Hb_003643_080--Hb_002155_020 Hb_011028_030 Hb_011028_030 Hb_003643_080--Hb_011028_030 Hb_004979_080 Hb_004979_080 Hb_003643_080--Hb_004979_080 Hb_000373_010 Hb_000373_010 Hb_003643_080--Hb_000373_010 Hb_012796_030--Hb_000289_090 Hb_012796_030--Hb_005092_090 Hb_006787_070 Hb_006787_070 Hb_012796_030--Hb_006787_070 Hb_004994_200 Hb_004994_200 Hb_012796_030--Hb_004994_200 Hb_027337_130--Hb_188075_010 Hb_002636_070 Hb_002636_070 Hb_027337_130--Hb_002636_070 Hb_004291_050 Hb_004291_050 Hb_027337_130--Hb_004291_050 Hb_008461_070 Hb_008461_070 Hb_027337_130--Hb_008461_070 Hb_000033_010 Hb_000033_010 Hb_027337_130--Hb_000033_010 Hb_006588_020 Hb_006588_020 Hb_005092_090--Hb_006588_020 Hb_001345_040 Hb_001345_040 Hb_005092_090--Hb_001345_040 Hb_116784_020 Hb_116784_020 Hb_005092_090--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_005092_090--Hb_001366_260 Hb_001652_130 Hb_001652_130 Hb_188075_010--Hb_001652_130 Hb_188075_010--Hb_008461_070 Hb_188075_010--Hb_001345_040 Hb_188075_010--Hb_000033_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 16.6855 10.2945 9.80681 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.83026 44.8372

CAGE analysis