Hb_116784_020

Information

Type -
Description -
Location Contig116784: 14343-16544
Sequence    

Annotation

kegg
ID bvg:104898613
description uncharacterized LOC104898613
nr
ID XP_010684010.1
description PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID I7K8L3
description T4.15 protein OS=Malus x robusta GN=T4.15 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116784_020 0.0 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
2 Hb_067472_010 0.0802704545 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
3 Hb_001366_260 0.0865719615 - - T4.15 [Malus x robusta]
4 Hb_000352_060 0.0900730965 - - RNA-directed DNA polymerase [Arachis hypogaea]
5 Hb_001468_040 0.0973213977 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
6 Hb_000027_230 0.1001330484 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_000820_100 0.1012855849 - - RNA-directed DNA polymerase [Arachis hypogaea]
8 Hb_005092_090 0.1021215836 - - cold regulated protein [Manihot esculenta]
9 Hb_000173_110 0.105032192 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
10 Hb_142522_040 0.1108153258 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_007543_020 0.1110978553 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
12 Hb_001345_040 0.1158794612 - - hypothetical protein VITISV_015004 [Vitis vinifera]
13 Hb_011472_050 0.1189224739 - - -
14 Hb_009434_060 0.1202414049 - - T4.15 [Malus x robusta]
15 Hb_002013_030 0.1219669147 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
16 Hb_000732_180 0.1258680904 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
17 Hb_001514_150 0.1278676549 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
18 Hb_004312_020 0.1282628503 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006787_070 0.1311687927 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
20 Hb_000060_130 0.1336970062 - - -

Gene co-expression network

sample Hb_116784_020 Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_116784_020--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_116784_020--Hb_001366_260 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_000820_100 Hb_000820_100 Hb_116784_020--Hb_000820_100 Hb_067472_010--Hb_001366_260 Hb_067472_010--Hb_001468_040 Hb_011472_050 Hb_011472_050 Hb_067472_010--Hb_011472_050 Hb_067472_010--Hb_000820_100 Hb_002013_030 Hb_002013_030 Hb_067472_010--Hb_002013_030 Hb_001366_260--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_001366_260--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_011649_030 Hb_011649_030 Hb_000352_060--Hb_011649_030 Hb_001345_040 Hb_001345_040 Hb_000352_060--Hb_001345_040 Hb_000352_060--Hb_000173_110 Hb_000352_060--Hb_067472_010 Hb_000352_060--Hb_001468_040 Hb_000237_170 Hb_000237_170 Hb_001468_040--Hb_000237_170 Hb_001468_040--Hb_001366_260 Hb_004312_020 Hb_004312_020 Hb_001468_040--Hb_004312_020 Hb_002983_090 Hb_002983_090 Hb_001468_040--Hb_002983_090 Hb_000574_340 Hb_000574_340 Hb_000027_230--Hb_000574_340 Hb_000027_230--Hb_005092_090 Hb_000027_230--Hb_001345_040 Hb_000027_230--Hb_067472_010 Hb_000027_230--Hb_000352_060 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_000173_110 Hb_000123_340 Hb_000123_340 Hb_000820_100--Hb_000123_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0500331 1.831 0.932363 0.714429 0.164989 0.0811297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.17441 5.3449

CAGE analysis