Hb_004520_010

Information

Type -
Description -
Location Contig4520: 216-3888
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa014973mg
description hypothetical protein
nr
ID XP_012068520.1
description PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
swissprot
ID P15629
description Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2
trembl
ID M5WXB0
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014973mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004520_010 0.0 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
2 Hb_000820_100 0.098549671 - - RNA-directed DNA polymerase [Arachis hypogaea]
3 Hb_035651_010 0.1212224357 - - receptor-kinase, putative [Ricinus communis]
4 Hb_001385_070 0.1233451122 - - hypothetical protein VITISV_019194 [Vitis vinifera]
5 Hb_005920_030 0.1265712425 - - putative polyprotein [Oryza sativa Japonica Group]
6 Hb_000123_340 0.1292281181 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
7 Hb_007543_020 0.130220871 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
8 Hb_127552_050 0.1315011409 - - hypothetical protein VITISV_030752 [Vitis vinifera]
9 Hb_001366_260 0.1400095151 - - T4.15 [Malus x robusta]
10 Hb_008055_030 0.142014236 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_004312_020 0.1433284536 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000260_730 0.1461746204 - - -
13 Hb_043792_030 0.1478253512 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
14 Hb_020831_070 0.1483091535 - - hypothetical protein VITISV_027174 [Vitis vinifera]
15 Hb_008834_010 0.1513546221 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
16 Hb_001856_280 0.1521970981 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
17 Hb_102602_020 0.1524008691 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
18 Hb_001345_040 0.1560736386 - - hypothetical protein VITISV_015004 [Vitis vinifera]
19 Hb_011649_030 0.1582994048 - - hypothetical protein [Vitis hybrid cultivar]
20 Hb_000173_110 0.1601103248 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]

Gene co-expression network

sample Hb_004520_010 Hb_004520_010 Hb_000820_100 Hb_000820_100 Hb_004520_010--Hb_000820_100 Hb_035651_010 Hb_035651_010 Hb_004520_010--Hb_035651_010 Hb_001385_070 Hb_001385_070 Hb_004520_010--Hb_001385_070 Hb_005920_030 Hb_005920_030 Hb_004520_010--Hb_005920_030 Hb_000123_340 Hb_000123_340 Hb_004520_010--Hb_000123_340 Hb_007543_020 Hb_007543_020 Hb_004520_010--Hb_007543_020 Hb_001366_260 Hb_001366_260 Hb_000820_100--Hb_001366_260 Hb_000820_100--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_000820_100--Hb_000173_110 Hb_116784_020 Hb_116784_020 Hb_000820_100--Hb_116784_020 Hb_000820_100--Hb_000123_340 Hb_004312_020 Hb_004312_020 Hb_035651_010--Hb_004312_020 Hb_020831_070 Hb_020831_070 Hb_035651_010--Hb_020831_070 Hb_003994_070 Hb_003994_070 Hb_035651_010--Hb_003994_070 Hb_009851_090 Hb_009851_090 Hb_035651_010--Hb_009851_090 Hb_035651_010--Hb_005920_030 Hb_127552_050 Hb_127552_050 Hb_001385_070--Hb_127552_050 Hb_001385_070--Hb_000123_340 Hb_011649_030 Hb_011649_030 Hb_001385_070--Hb_011649_030 Hb_001793_040 Hb_001793_040 Hb_001385_070--Hb_001793_040 Hb_000574_330 Hb_000574_330 Hb_001385_070--Hb_000574_330 Hb_008055_030 Hb_008055_030 Hb_005920_030--Hb_008055_030 Hb_001856_280 Hb_001856_280 Hb_005920_030--Hb_001856_280 Hb_043792_030 Hb_043792_030 Hb_005920_030--Hb_043792_030 Hb_003311_020 Hb_003311_020 Hb_005920_030--Hb_003311_020 Hb_019654_170 Hb_019654_170 Hb_005920_030--Hb_019654_170 Hb_000567_270 Hb_000567_270 Hb_005920_030--Hb_000567_270 Hb_000123_340--Hb_000173_110 Hb_000123_340--Hb_127552_050 Hb_000123_340--Hb_007543_020 Hb_010565_030 Hb_010565_030 Hb_000123_340--Hb_010565_030 Hb_007543_020--Hb_001366_260 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148284 2.22272 1.62488 0.986786 0.188347 0.179184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0142422 0.0224152 0.214454 4.37368 13.778

CAGE analysis