Hb_127552_050

Information

Type -
Description -
Location Contig127552: 73803-79586
Sequence    

Annotation

kegg
ID gmx:102668041
description uncharacterized LOC102668041
nr
ID CAN75922.1
description hypothetical protein VITISV_030752 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AQK4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030752 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein VITISV_001206

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127552_050 0.0 - - hypothetical protein VITISV_030752 [Vitis vinifera]
2 Hb_001385_070 0.0860028451 - - hypothetical protein VITISV_019194 [Vitis vinifera]
3 Hb_011649_030 0.1047195241 - - hypothetical protein [Vitis hybrid cultivar]
4 Hb_000123_340 0.1115979516 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
5 Hb_000574_330 0.1153095601 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
6 Hb_041813_040 0.1305452441 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
7 Hb_004520_010 0.1315011409 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_001793_040 0.1417493863 - - hypothetical protein VITISV_006810 [Vitis vinifera]
9 Hb_102602_020 0.1460791276 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
10 Hb_003687_160 0.1481543558 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_000820_100 0.1521016931 - - RNA-directed DNA polymerase [Arachis hypogaea]
12 Hb_035651_010 0.157505462 - - receptor-kinase, putative [Ricinus communis]
13 Hb_000352_060 0.1579639309 - - RNA-directed DNA polymerase [Arachis hypogaea]
14 Hb_003291_030 0.1597877793 - - Gag-pol protein, putative [Solanum demissum]
15 Hb_168031_020 0.1607539887 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
16 Hb_000173_110 0.1625317756 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
17 Hb_007543_020 0.1635145527 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
18 Hb_002013_030 0.1669391542 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
19 Hb_005920_030 0.170122276 - - putative polyprotein [Oryza sativa Japonica Group]
20 Hb_001793_030 0.1721628109 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]

Gene co-expression network

sample Hb_127552_050 Hb_127552_050 Hb_001385_070 Hb_001385_070 Hb_127552_050--Hb_001385_070 Hb_011649_030 Hb_011649_030 Hb_127552_050--Hb_011649_030 Hb_000123_340 Hb_000123_340 Hb_127552_050--Hb_000123_340 Hb_000574_330 Hb_000574_330 Hb_127552_050--Hb_000574_330 Hb_041813_040 Hb_041813_040 Hb_127552_050--Hb_041813_040 Hb_004520_010 Hb_004520_010 Hb_127552_050--Hb_004520_010 Hb_001385_070--Hb_000123_340 Hb_001385_070--Hb_011649_030 Hb_001793_040 Hb_001793_040 Hb_001385_070--Hb_001793_040 Hb_001385_070--Hb_000574_330 Hb_001385_070--Hb_004520_010 Hb_000352_060 Hb_000352_060 Hb_011649_030--Hb_000352_060 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_011649_030--Hb_041813_040 Hb_011649_030--Hb_000574_330 Hb_000173_110 Hb_000173_110 Hb_000123_340--Hb_000173_110 Hb_000820_100 Hb_000820_100 Hb_000123_340--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_000123_340--Hb_007543_020 Hb_010565_030 Hb_010565_030 Hb_000123_340--Hb_010565_030 Hb_000574_330--Hb_041813_040 Hb_000574_330--Hb_000123_340 Hb_004109_130 Hb_004109_130 Hb_000574_330--Hb_004109_130 Hb_102602_020 Hb_102602_020 Hb_041813_040--Hb_102602_020 Hb_041813_040--Hb_000352_060 Hb_067472_010 Hb_067472_010 Hb_041813_040--Hb_067472_010 Hb_004520_010--Hb_000820_100 Hb_035651_010 Hb_035651_010 Hb_004520_010--Hb_035651_010 Hb_005920_030 Hb_005920_030 Hb_004520_010--Hb_005920_030 Hb_004520_010--Hb_000123_340 Hb_004520_010--Hb_007543_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0738066 0.279881 0.18709 0.20437 0.0386079 0.0692569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0110151 0.017337 0.0166453 0.401733 2.35866

CAGE analysis