Hb_001793_040

Information

Type -
Description -
Location Contig1793: 37608-40810
Sequence    

Annotation

kegg
ID tcc:TCM_024268
description hypothetical protein
nr
ID CAN74964.1
description hypothetical protein VITISV_006810 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BSK6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17331: 15538-65681 , PASA_asmbl_17332: 15493-65585 , PASA_asmbl_17336: 23121-61556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001793_040 0.0 - - hypothetical protein VITISV_006810 [Vitis vinifera]
2 Hb_001385_070 0.1141512775 - - hypothetical protein VITISV_019194 [Vitis vinifera]
3 Hb_003414_040 0.1305164871 - - hypothetical protein VITISV_016691 [Vitis vinifera]
4 Hb_005678_030 0.1333857818 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
5 Hb_011649_030 0.1364040557 - - hypothetical protein [Vitis hybrid cultivar]
6 Hb_127552_050 0.1417493863 - - hypothetical protein VITISV_030752 [Vitis vinifera]
7 Hb_020831_070 0.143742127 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_077151_010 0.1457175425 - - ankyrin repeat protein [Bruguiera gymnorhiza]
9 Hb_000441_080 0.1480904004 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_000123_340 0.1483225012 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
11 Hb_000644_020 0.1522584061 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_170878_020 0.1525040442 - - -
13 Hb_006455_020 0.1558580978 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
14 Hb_035651_010 0.1559813259 - - receptor-kinase, putative [Ricinus communis]
15 Hb_023738_010 0.1561852744 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
16 Hb_002111_010 0.1581258005 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
17 Hb_004374_090 0.1602831666 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
18 Hb_001300_160 0.1611252743 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
19 Hb_001383_080 0.1624631718 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
20 Hb_001345_040 0.1653546571 - - hypothetical protein VITISV_015004 [Vitis vinifera]

Gene co-expression network

sample Hb_001793_040 Hb_001793_040 Hb_001385_070 Hb_001385_070 Hb_001793_040--Hb_001385_070 Hb_003414_040 Hb_003414_040 Hb_001793_040--Hb_003414_040 Hb_005678_030 Hb_005678_030 Hb_001793_040--Hb_005678_030 Hb_011649_030 Hb_011649_030 Hb_001793_040--Hb_011649_030 Hb_127552_050 Hb_127552_050 Hb_001793_040--Hb_127552_050 Hb_020831_070 Hb_020831_070 Hb_001793_040--Hb_020831_070 Hb_001385_070--Hb_127552_050 Hb_000123_340 Hb_000123_340 Hb_001385_070--Hb_000123_340 Hb_001385_070--Hb_011649_030 Hb_000574_330 Hb_000574_330 Hb_001385_070--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_001385_070--Hb_004520_010 Hb_000432_020 Hb_000432_020 Hb_003414_040--Hb_000432_020 Hb_001383_080 Hb_001383_080 Hb_003414_040--Hb_001383_080 Hb_093388_010 Hb_093388_010 Hb_003414_040--Hb_093388_010 Hb_001250_030 Hb_001250_030 Hb_003414_040--Hb_001250_030 Hb_003311_020 Hb_003311_020 Hb_003414_040--Hb_003311_020 Hb_000135_080 Hb_000135_080 Hb_005678_030--Hb_000135_080 Hb_077151_010 Hb_077151_010 Hb_005678_030--Hb_077151_010 Hb_000476_030 Hb_000476_030 Hb_005678_030--Hb_000476_030 Hb_168319_040 Hb_168319_040 Hb_005678_030--Hb_168319_040 Hb_006455_020 Hb_006455_020 Hb_005678_030--Hb_006455_020 Hb_000441_080 Hb_000441_080 Hb_005678_030--Hb_000441_080 Hb_000352_060 Hb_000352_060 Hb_011649_030--Hb_000352_060 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_011649_030--Hb_127552_050 Hb_041813_040 Hb_041813_040 Hb_011649_030--Hb_041813_040 Hb_011649_030--Hb_000574_330 Hb_127552_050--Hb_000123_340 Hb_127552_050--Hb_000574_330 Hb_127552_050--Hb_041813_040 Hb_127552_050--Hb_004520_010 Hb_020831_070--Hb_006455_020 Hb_043792_030 Hb_043792_030 Hb_020831_070--Hb_043792_030 Hb_001856_280 Hb_001856_280 Hb_020831_070--Hb_001856_280 Hb_019654_170 Hb_019654_170 Hb_020831_070--Hb_019654_170 Hb_035651_010 Hb_035651_010 Hb_020831_070--Hb_035651_010 Hb_020831_070--Hb_003311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.155748 0.233613 0.134814 0.0227375 0.0309652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0203143 0 0.258942 1.88179

CAGE analysis