Hb_043792_030

Information

Type -
Description -
Location Contig43792: 18527-19712
Sequence    

Annotation

kegg
ID csv:101232747
description uncharacterized LOC101232747
nr
ID XP_012070206.1
description PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A087GAS3
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1
Gene Ontology
ID GO:0004190
description ty3 gypsy retrotransposon protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043792_030 0.0 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
2 Hb_001856_280 0.0455794033 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
3 Hb_000346_050 0.0680997428 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
4 Hb_019654_170 0.0704628471 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
5 Hb_020831_070 0.092500972 - - hypothetical protein VITISV_027174 [Vitis vinifera]
6 Hb_005920_030 0.1060649514 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_003311_020 0.122291701 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006455_020 0.1228639145 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
9 Hb_003927_020 0.1240291704 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
10 Hb_008055_030 0.1307708889 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_001880_020 0.1346668961 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
12 Hb_000167_070 0.1371909464 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
13 Hb_008834_010 0.1393676641 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
14 Hb_150516_010 0.1405728271 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
15 Hb_035651_010 0.1415150815 - - receptor-kinase, putative [Ricinus communis]
16 Hb_001355_050 0.141826526 - - -
17 Hb_005595_030 0.1443321132 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
18 Hb_000567_270 0.144517141 - - hypothetical protein L484_017162 [Morus notabilis]
19 Hb_003994_070 0.1478171888 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_004520_010 0.1478253512 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_043792_030 Hb_043792_030 Hb_001856_280 Hb_001856_280 Hb_043792_030--Hb_001856_280 Hb_000346_050 Hb_000346_050 Hb_043792_030--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_043792_030--Hb_019654_170 Hb_020831_070 Hb_020831_070 Hb_043792_030--Hb_020831_070 Hb_005920_030 Hb_005920_030 Hb_043792_030--Hb_005920_030 Hb_003311_020 Hb_003311_020 Hb_043792_030--Hb_003311_020 Hb_001856_280--Hb_019654_170 Hb_001856_280--Hb_000346_050 Hb_001856_280--Hb_005920_030 Hb_001856_280--Hb_020831_070 Hb_001880_020 Hb_001880_020 Hb_001856_280--Hb_001880_020 Hb_000346_050--Hb_019654_170 Hb_003927_020 Hb_003927_020 Hb_000346_050--Hb_003927_020 Hb_150516_010 Hb_150516_010 Hb_000346_050--Hb_150516_010 Hb_000167_070 Hb_000167_070 Hb_000346_050--Hb_000167_070 Hb_019654_170--Hb_005920_030 Hb_019654_170--Hb_003311_020 Hb_019654_170--Hb_020831_070 Hb_006455_020 Hb_006455_020 Hb_020831_070--Hb_006455_020 Hb_035651_010 Hb_035651_010 Hb_020831_070--Hb_035651_010 Hb_020831_070--Hb_003311_020 Hb_008055_030 Hb_008055_030 Hb_005920_030--Hb_008055_030 Hb_005920_030--Hb_003311_020 Hb_000567_270 Hb_000567_270 Hb_005920_030--Hb_000567_270 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_003311_020--Hb_000567_270 Hb_032016_010 Hb_032016_010 Hb_003311_020--Hb_032016_010 Hb_009851_090 Hb_009851_090 Hb_003311_020--Hb_009851_090 Hb_007533_050 Hb_007533_050 Hb_003311_020--Hb_007533_050 Hb_000432_020 Hb_000432_020 Hb_003311_020--Hb_000432_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.179713 0.109148 0.0517004 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.441109 1.5054

CAGE analysis