Hb_000167_070

Information

Type -
Description -
Location Contig167: 45331-47842
Sequence    

Annotation

kegg
ID gmx:102663417
description uncharacterized LOC102663417
nr
ID XP_012066591.1
description PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9QD67
description Uncharacterized protein OS=Morus notabilis GN=L484_012687 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15400: 45395-45902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_070 0.0 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
2 Hb_001880_020 0.0555762062 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
3 Hb_003927_020 0.0877623144 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
4 Hb_159404_010 0.1209250185 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_001856_280 0.123733928 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_014967_010 0.1245986394 - - -
7 Hb_005595_030 0.1280878483 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
8 Hb_000346_050 0.1294076044 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
9 Hb_043792_030 0.1371909464 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
10 Hb_020400_010 0.1520766908 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
11 Hb_019654_170 0.1547362171 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
12 Hb_001355_050 0.1606536114 - - -
13 Hb_150516_010 0.1676979833 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
14 Hb_008755_020 0.1715734554 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_094002_010 0.1728601324 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
16 Hb_110782_010 0.1730207795 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
17 Hb_056506_080 0.1730851809 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
18 Hb_011892_010 0.1737769567 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_006992_030 0.1764702083 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
20 Hb_001871_030 0.1785503776 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000167_070 Hb_000167_070 Hb_001880_020 Hb_001880_020 Hb_000167_070--Hb_001880_020 Hb_003927_020 Hb_003927_020 Hb_000167_070--Hb_003927_020 Hb_159404_010 Hb_159404_010 Hb_000167_070--Hb_159404_010 Hb_001856_280 Hb_001856_280 Hb_000167_070--Hb_001856_280 Hb_014967_010 Hb_014967_010 Hb_000167_070--Hb_014967_010 Hb_005595_030 Hb_005595_030 Hb_000167_070--Hb_005595_030 Hb_001880_020--Hb_005595_030 Hb_001880_020--Hb_003927_020 Hb_001880_020--Hb_001856_280 Hb_043792_030 Hb_043792_030 Hb_001880_020--Hb_043792_030 Hb_001355_050 Hb_001355_050 Hb_001880_020--Hb_001355_050 Hb_003927_020--Hb_001355_050 Hb_003927_020--Hb_005595_030 Hb_006992_030 Hb_006992_030 Hb_003927_020--Hb_006992_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_159404_010--Hb_014967_010 Hb_020400_010 Hb_020400_010 Hb_159404_010--Hb_020400_010 Hb_008755_020 Hb_008755_020 Hb_159404_010--Hb_008755_020 Hb_056506_080 Hb_056506_080 Hb_159404_010--Hb_056506_080 Hb_110782_010 Hb_110782_010 Hb_159404_010--Hb_110782_010 Hb_001856_280--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_001856_280--Hb_019654_170 Hb_001856_280--Hb_000346_050 Hb_005920_030 Hb_005920_030 Hb_001856_280--Hb_005920_030 Hb_020831_070 Hb_020831_070 Hb_001856_280--Hb_020831_070 Hb_014967_010--Hb_020400_010 Hb_014967_010--Hb_008755_020 Hb_014967_010--Hb_056506_080 Hb_014967_010--Hb_110782_010 Hb_005595_030--Hb_001355_050 Hb_005595_030--Hb_006992_030 Hb_094002_010 Hb_094002_010 Hb_005595_030--Hb_094002_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0772763 0.0311652 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.323626 0.770986

CAGE analysis