Hb_008755_020

Information

Type -
Description -
Location Contig8755: 29159-32421
Sequence    

Annotation

kegg
ID rcu:RCOM_0048080
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.1 1.3.1.74)
nr
ID XP_002533428.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9T5A9
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0048080 PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008755_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_056506_080 0.0478172931 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
3 Hb_114121_010 0.0756938415 - - -
4 Hb_006120_160 0.0798703508 - - -
5 Hb_179183_010 0.0822314269 - - RALF-LIKE 32 family protein [Populus trichocarpa]
6 Hb_014967_010 0.0835738762 - - -
7 Hb_101034_010 0.0852257397 - - -
8 Hb_020400_010 0.0891009964 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
9 Hb_005432_020 0.0899543303 - - -
10 Hb_159404_010 0.0899781229 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
11 Hb_002733_050 0.0945129055 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_181013_010 0.0951059528 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
13 Hb_000142_090 0.0993467928 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
14 Hb_134377_070 0.1068843508 - - -
15 Hb_159124_010 0.1093984544 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
16 Hb_168909_010 0.1216114916 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
17 Hb_006013_030 0.142938325 - - -
18 Hb_110782_010 0.1438674191 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
19 Hb_072173_010 0.1527392869 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
20 Hb_039547_010 0.15380025 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_008755_020 Hb_008755_020 Hb_056506_080 Hb_056506_080 Hb_008755_020--Hb_056506_080 Hb_114121_010 Hb_114121_010 Hb_008755_020--Hb_114121_010 Hb_006120_160 Hb_006120_160 Hb_008755_020--Hb_006120_160 Hb_179183_010 Hb_179183_010 Hb_008755_020--Hb_179183_010 Hb_014967_010 Hb_014967_010 Hb_008755_020--Hb_014967_010 Hb_101034_010 Hb_101034_010 Hb_008755_020--Hb_101034_010 Hb_056506_080--Hb_006120_160 Hb_056506_080--Hb_101034_010 Hb_005432_020 Hb_005432_020 Hb_056506_080--Hb_005432_020 Hb_181013_010 Hb_181013_010 Hb_056506_080--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_056506_080--Hb_000142_090 Hb_002733_050 Hb_002733_050 Hb_114121_010--Hb_002733_050 Hb_168909_010 Hb_168909_010 Hb_114121_010--Hb_168909_010 Hb_114121_010--Hb_179183_010 Hb_006013_030 Hb_006013_030 Hb_114121_010--Hb_006013_030 Hb_000280_120 Hb_000280_120 Hb_114121_010--Hb_000280_120 Hb_006120_160--Hb_101034_010 Hb_006120_160--Hb_005432_020 Hb_006120_160--Hb_181013_010 Hb_006120_160--Hb_000142_090 Hb_159124_010 Hb_159124_010 Hb_006120_160--Hb_159124_010 Hb_134377_070 Hb_134377_070 Hb_006120_160--Hb_134377_070 Hb_179183_010--Hb_006120_160 Hb_179183_010--Hb_101034_010 Hb_179183_010--Hb_159124_010 Hb_000916_010 Hb_000916_010 Hb_179183_010--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_179183_010--Hb_039547_010 Hb_179183_010--Hb_005432_020 Hb_159404_010 Hb_159404_010 Hb_014967_010--Hb_159404_010 Hb_020400_010 Hb_020400_010 Hb_014967_010--Hb_020400_010 Hb_014967_010--Hb_056506_080 Hb_110782_010 Hb_110782_010 Hb_014967_010--Hb_110782_010 Hb_000167_070 Hb_000167_070 Hb_014967_010--Hb_000167_070 Hb_101034_010--Hb_005432_020 Hb_101034_010--Hb_181013_010 Hb_101034_010--Hb_000142_090 Hb_101034_010--Hb_159124_010 Hb_101034_010--Hb_134377_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00644014 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00922049 0.02479

CAGE analysis