Hb_000142_090

Information

Type -
Description -
Location Contig142: 198598-200086
Sequence    

Annotation

kegg
ID rcu:RCOM_1255980
description S-locus-specific glycoprotein S13 precursor, putative
nr
ID XP_012070691.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
swissprot
ID O81833
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1
trembl
ID A0A067L3A3
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_00737 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000142_090 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
2 Hb_181013_010 0.0051641104 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
3 Hb_134377_070 0.0089986918 - - -
4 Hb_005432_020 0.0115621883 - - -
5 Hb_101034_010 0.0175888636 - - -
6 Hb_006120_160 0.0246510601 - - -
7 Hb_159124_010 0.0248709489 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
8 Hb_056506_080 0.0571873493 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
9 Hb_047923_030 0.0672205888 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
10 Hb_002576_010 0.0709170847 - - -
11 Hb_000975_060 0.0781522094 - - -
12 Hb_179183_010 0.0833593137 - - RALF-LIKE 32 family protein [Populus trichocarpa]
13 Hb_099878_040 0.09084335 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
14 Hb_000248_020 0.0964777556 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
15 Hb_008755_020 0.0993467928 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_094694_010 0.1007537525 - - -
17 Hb_039547_010 0.1171469031 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
18 Hb_000916_010 0.1177395978 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
19 Hb_001174_050 0.1284340119 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000209_010 0.1431450844 - - -

Gene co-expression network

sample Hb_000142_090 Hb_000142_090 Hb_181013_010 Hb_181013_010 Hb_000142_090--Hb_181013_010 Hb_134377_070 Hb_134377_070 Hb_000142_090--Hb_134377_070 Hb_005432_020 Hb_005432_020 Hb_000142_090--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_000142_090--Hb_101034_010 Hb_006120_160 Hb_006120_160 Hb_000142_090--Hb_006120_160 Hb_159124_010 Hb_159124_010 Hb_000142_090--Hb_159124_010 Hb_181013_010--Hb_005432_020 Hb_181013_010--Hb_101034_010 Hb_181013_010--Hb_134377_070 Hb_181013_010--Hb_006120_160 Hb_181013_010--Hb_159124_010 Hb_134377_070--Hb_005432_020 Hb_134377_070--Hb_101034_010 Hb_134377_070--Hb_159124_010 Hb_134377_070--Hb_006120_160 Hb_005432_020--Hb_101034_010 Hb_005432_020--Hb_006120_160 Hb_005432_020--Hb_159124_010 Hb_101034_010--Hb_006120_160 Hb_101034_010--Hb_159124_010 Hb_006120_160--Hb_159124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0215381 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0187663 0.0942471

CAGE analysis