Hb_179183_010

Information

Type -
Description -
Location Contig179183: 525-854
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08660g
description RALF-LIKE 32 family protein
nr
ID XP_006373094.1
description RALF-LIKE 32 family protein [Populus trichocarpa]
swissprot
ID O23262
description Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1
trembl
ID B9N0U4
description RALF-LIKE 32 family protein OS=Populus trichocarpa GN=POPTR_0017s08660g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179183_010 0.0 - - RALF-LIKE 32 family protein [Populus trichocarpa]
2 Hb_006120_160 0.060795796 - - -
3 Hb_101034_010 0.0670942832 - - -
4 Hb_159124_010 0.072106636 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
5 Hb_000916_010 0.072521958 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
6 Hb_039547_010 0.0725797013 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_005432_020 0.0725896562 - - -
8 Hb_181013_010 0.0785176324 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
9 Hb_008755_020 0.0822314269 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_114121_010 0.0828258497 - - -
11 Hb_056506_080 0.0829246474 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
12 Hb_000142_090 0.0833593137 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
13 Hb_168909_010 0.0881264179 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
14 Hb_000209_010 0.0882591822 - - -
15 Hb_134377_070 0.0918906076 - - -
16 Hb_001301_070 0.0947483215 - - -
17 Hb_094694_010 0.0962483843 - - -
18 Hb_000192_060 0.0973915544 - - -
19 Hb_000975_060 0.1014619884 - - -
20 Hb_000248_020 0.1024677374 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_179183_010 Hb_179183_010 Hb_006120_160 Hb_006120_160 Hb_179183_010--Hb_006120_160 Hb_101034_010 Hb_101034_010 Hb_179183_010--Hb_101034_010 Hb_159124_010 Hb_159124_010 Hb_179183_010--Hb_159124_010 Hb_000916_010 Hb_000916_010 Hb_179183_010--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_179183_010--Hb_039547_010 Hb_005432_020 Hb_005432_020 Hb_179183_010--Hb_005432_020 Hb_006120_160--Hb_101034_010 Hb_006120_160--Hb_005432_020 Hb_181013_010 Hb_181013_010 Hb_006120_160--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_006120_160--Hb_000142_090 Hb_006120_160--Hb_159124_010 Hb_134377_070 Hb_134377_070 Hb_006120_160--Hb_134377_070 Hb_101034_010--Hb_005432_020 Hb_101034_010--Hb_181013_010 Hb_101034_010--Hb_000142_090 Hb_101034_010--Hb_159124_010 Hb_101034_010--Hb_134377_070 Hb_159124_010--Hb_181013_010 Hb_159124_010--Hb_005432_020 Hb_159124_010--Hb_000142_090 Hb_159124_010--Hb_134377_070 Hb_000916_010--Hb_039547_010 Hb_000209_010 Hb_000209_010 Hb_000916_010--Hb_000209_010 Hb_151411_010 Hb_151411_010 Hb_000916_010--Hb_151411_010 Hb_094694_010 Hb_094694_010 Hb_000916_010--Hb_094694_010 Hb_000192_060 Hb_000192_060 Hb_000916_010--Hb_000192_060 Hb_000248_020 Hb_000248_020 Hb_000916_010--Hb_000248_020 Hb_039547_010--Hb_000209_010 Hb_039547_010--Hb_151411_010 Hb_039547_010--Hb_094694_010 Hb_039547_010--Hb_000192_060 Hb_039547_010--Hb_000248_020 Hb_005432_020--Hb_181013_010 Hb_005432_020--Hb_000142_090 Hb_005432_020--Hb_134377_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.138321 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.106082 0.380495

CAGE analysis