Hb_000916_010

Information

Type -
Description -
Location Contig916: 5129-7830
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08730g
description POPTRDRAFT_751384; hypothetical protein
nr
ID XP_002299564.2
description hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9GKP2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08730g PE=4 SV=2
Gene Ontology
ID GO:0005488
description upf0481 protein at3g47200-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000916_010 0.0 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
2 Hb_039547_010 0.0009126977 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
3 Hb_000209_010 0.0266530949 - - -
4 Hb_151411_010 0.042956673 - - -
5 Hb_094694_010 0.0498823779 - - -
6 Hb_000192_060 0.0510602177 - - -
7 Hb_000248_020 0.0621010742 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
8 Hb_001301_070 0.0672533434 - - -
9 Hb_179183_010 0.072521958 - - RALF-LIKE 32 family protein [Populus trichocarpa]
10 Hb_000975_060 0.0773806368 - - -
11 Hb_159124_010 0.0945112542 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
12 Hb_099878_040 0.0992512242 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
13 Hb_006120_160 0.1065986718 - - -
14 Hb_101034_010 0.1093005485 - - -
15 Hb_005432_020 0.1119303777 - - -
16 Hb_181013_010 0.1150266166 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
17 Hb_000142_090 0.1177395978 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
18 Hb_168909_010 0.1198771413 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
19 Hb_134377_070 0.1228816686 - - -
20 Hb_008642_050 0.1368280664 - - -

Gene co-expression network

sample Hb_000916_010 Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_000916_010--Hb_039547_010 Hb_000209_010 Hb_000209_010 Hb_000916_010--Hb_000209_010 Hb_151411_010 Hb_151411_010 Hb_000916_010--Hb_151411_010 Hb_094694_010 Hb_094694_010 Hb_000916_010--Hb_094694_010 Hb_000192_060 Hb_000192_060 Hb_000916_010--Hb_000192_060 Hb_000248_020 Hb_000248_020 Hb_000916_010--Hb_000248_020 Hb_039547_010--Hb_000209_010 Hb_039547_010--Hb_151411_010 Hb_039547_010--Hb_094694_010 Hb_039547_010--Hb_000192_060 Hb_039547_010--Hb_000248_020 Hb_000209_010--Hb_151411_010 Hb_000209_010--Hb_000192_060 Hb_001301_070 Hb_001301_070 Hb_000209_010--Hb_001301_070 Hb_000209_010--Hb_094694_010 Hb_151411_010--Hb_000192_060 Hb_151411_010--Hb_001301_070 Hb_151411_010--Hb_094694_010 Hb_094694_010--Hb_000248_020 Hb_000975_060 Hb_000975_060 Hb_094694_010--Hb_000975_060 Hb_099878_040 Hb_099878_040 Hb_094694_010--Hb_099878_040 Hb_000192_060--Hb_001301_070 Hb_179183_010 Hb_179183_010 Hb_000192_060--Hb_179183_010 Hb_000248_020--Hb_000975_060 Hb_000248_020--Hb_099878_040 Hb_159124_010 Hb_159124_010 Hb_000248_020--Hb_159124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.069674 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0302523 0.154555

CAGE analysis