Hb_001301_070

Information

Type -
Description -
Location Contig1301: 69254-71944
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_070 0.0 - - -
2 Hb_000192_060 0.0240039157 - - -
3 Hb_151411_010 0.0440946165 - - -
4 Hb_000209_010 0.0471362537 - - -
5 Hb_000916_010 0.0672533434 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
6 Hb_039547_010 0.0681642034 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_000243_050 0.0782128477 - - ADP-ribosylation factor, putative [Ricinus communis]
8 Hb_168909_010 0.0794660186 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
9 Hb_003938_100 0.0894415184 - - conserved hypothetical protein [Ricinus communis]
10 Hb_179183_010 0.0947483215 - - RALF-LIKE 32 family protein [Populus trichocarpa]
11 Hb_000280_120 0.1114561605 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
12 Hb_002056_140 0.1145658909 - - -
13 Hb_094694_010 0.1166899169 - - -
14 Hb_138667_010 0.1176611951 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
15 Hb_114121_010 0.1235682288 - - -
16 Hb_000248_020 0.1290136298 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
17 Hb_000975_060 0.1438901144 - - -
18 Hb_002733_050 0.147490915 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_005852_010 0.1480621315 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_159124_010 0.1491288918 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]

Gene co-expression network

sample Hb_001301_070 Hb_001301_070 Hb_000192_060 Hb_000192_060 Hb_001301_070--Hb_000192_060 Hb_151411_010 Hb_151411_010 Hb_001301_070--Hb_151411_010 Hb_000209_010 Hb_000209_010 Hb_001301_070--Hb_000209_010 Hb_000916_010 Hb_000916_010 Hb_001301_070--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_001301_070--Hb_039547_010 Hb_000243_050 Hb_000243_050 Hb_001301_070--Hb_000243_050 Hb_000192_060--Hb_151411_010 Hb_000192_060--Hb_000209_010 Hb_000192_060--Hb_000916_010 Hb_000192_060--Hb_039547_010 Hb_179183_010 Hb_179183_010 Hb_000192_060--Hb_179183_010 Hb_151411_010--Hb_000209_010 Hb_151411_010--Hb_000916_010 Hb_151411_010--Hb_039547_010 Hb_094694_010 Hb_094694_010 Hb_151411_010--Hb_094694_010 Hb_000209_010--Hb_000916_010 Hb_000209_010--Hb_039547_010 Hb_000209_010--Hb_094694_010 Hb_000916_010--Hb_039547_010 Hb_000916_010--Hb_094694_010 Hb_000248_020 Hb_000248_020 Hb_000916_010--Hb_000248_020 Hb_039547_010--Hb_094694_010 Hb_039547_010--Hb_000248_020 Hb_138667_010 Hb_138667_010 Hb_000243_050--Hb_138667_010 Hb_000280_120 Hb_000280_120 Hb_000243_050--Hb_000280_120 Hb_003938_100 Hb_003938_100 Hb_000243_050--Hb_003938_100 Hb_168909_010 Hb_168909_010 Hb_000243_050--Hb_168909_010 Hb_028872_040 Hb_028872_040 Hb_000243_050--Hb_028872_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.237827 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.11138 0.393413

CAGE analysis