Hb_000192_060

Information

Type -
Description -
Location Contig192: 41982-50104
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000192_060 0.0 - - -
2 Hb_151411_010 0.0201155789 - - -
3 Hb_001301_070 0.0240039157 - - -
4 Hb_000209_010 0.0263544654 - - -
5 Hb_000916_010 0.0510602177 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
6 Hb_039547_010 0.0519366808 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_179183_010 0.0973915544 - - RALF-LIKE 32 family protein [Populus trichocarpa]
8 Hb_094694_010 0.0983991718 - - -
9 Hb_168909_010 0.1006847097 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
10 Hb_000243_050 0.101067387 - - ADP-ribosylation factor, putative [Ricinus communis]
11 Hb_003938_100 0.1037167125 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002056_140 0.1060652487 - - -
13 Hb_000248_020 0.1109546943 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
14 Hb_000975_060 0.1279245788 - - -
15 Hb_005852_010 0.1287906351 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_000280_120 0.1351216366 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
17 Hb_138667_010 0.1400447141 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
18 Hb_114121_010 0.1403222583 - - -
19 Hb_159124_010 0.141243308 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
20 Hb_006120_160 0.1472546701 - - -

Gene co-expression network

sample Hb_000192_060 Hb_000192_060 Hb_151411_010 Hb_151411_010 Hb_000192_060--Hb_151411_010 Hb_001301_070 Hb_001301_070 Hb_000192_060--Hb_001301_070 Hb_000209_010 Hb_000209_010 Hb_000192_060--Hb_000209_010 Hb_000916_010 Hb_000916_010 Hb_000192_060--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_000192_060--Hb_039547_010 Hb_179183_010 Hb_179183_010 Hb_000192_060--Hb_179183_010 Hb_151411_010--Hb_000209_010 Hb_151411_010--Hb_000916_010 Hb_151411_010--Hb_039547_010 Hb_151411_010--Hb_001301_070 Hb_094694_010 Hb_094694_010 Hb_151411_010--Hb_094694_010 Hb_001301_070--Hb_000209_010 Hb_001301_070--Hb_000916_010 Hb_001301_070--Hb_039547_010 Hb_000243_050 Hb_000243_050 Hb_001301_070--Hb_000243_050 Hb_000209_010--Hb_000916_010 Hb_000209_010--Hb_039547_010 Hb_000209_010--Hb_094694_010 Hb_000916_010--Hb_039547_010 Hb_000916_010--Hb_094694_010 Hb_000248_020 Hb_000248_020 Hb_000916_010--Hb_000248_020 Hb_039547_010--Hb_094694_010 Hb_039547_010--Hb_000248_020 Hb_006120_160 Hb_006120_160 Hb_179183_010--Hb_006120_160 Hb_101034_010 Hb_101034_010 Hb_179183_010--Hb_101034_010 Hb_159124_010 Hb_159124_010 Hb_179183_010--Hb_159124_010 Hb_179183_010--Hb_000916_010 Hb_179183_010--Hb_039547_010 Hb_005432_020 Hb_005432_020 Hb_179183_010--Hb_005432_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.151057 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0618322 0.258729

CAGE analysis