Hb_056506_080

Information

Type -
Description -
Location Contig56506: 42620-45266
Sequence    

Annotation

kegg
ID bvg:104888944
description uncharacterized LOC104888944
nr
ID XP_010672360.1
description PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCI7
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056506_080 0.0 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
2 Hb_006120_160 0.0453782508 - - -
3 Hb_008755_020 0.0478172931 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_101034_010 0.0478294058 - - -
5 Hb_005432_020 0.0505775579 - - -
6 Hb_181013_010 0.0540456289 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
7 Hb_000142_090 0.0571873493 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
8 Hb_134377_070 0.063246182 - - -
9 Hb_159124_010 0.0741675531 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
10 Hb_179183_010 0.0829246474 - - RALF-LIKE 32 family protein [Populus trichocarpa]
11 Hb_159404_010 0.0963690089 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
12 Hb_014967_010 0.0977750828 - - -
13 Hb_002576_010 0.1117559872 - - -
14 Hb_114121_010 0.1153453741 - - -
15 Hb_047923_030 0.1161871649 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
16 Hb_020400_010 0.1262545544 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
17 Hb_000975_060 0.129629702 - - -
18 Hb_002733_050 0.139268481 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_000248_020 0.1439824357 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
20 Hb_039547_010 0.144652505 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_056506_080 Hb_056506_080 Hb_006120_160 Hb_006120_160 Hb_056506_080--Hb_006120_160 Hb_008755_020 Hb_008755_020 Hb_056506_080--Hb_008755_020 Hb_101034_010 Hb_101034_010 Hb_056506_080--Hb_101034_010 Hb_005432_020 Hb_005432_020 Hb_056506_080--Hb_005432_020 Hb_181013_010 Hb_181013_010 Hb_056506_080--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_056506_080--Hb_000142_090 Hb_006120_160--Hb_101034_010 Hb_006120_160--Hb_005432_020 Hb_006120_160--Hb_181013_010 Hb_006120_160--Hb_000142_090 Hb_159124_010 Hb_159124_010 Hb_006120_160--Hb_159124_010 Hb_134377_070 Hb_134377_070 Hb_006120_160--Hb_134377_070 Hb_114121_010 Hb_114121_010 Hb_008755_020--Hb_114121_010 Hb_008755_020--Hb_006120_160 Hb_179183_010 Hb_179183_010 Hb_008755_020--Hb_179183_010 Hb_014967_010 Hb_014967_010 Hb_008755_020--Hb_014967_010 Hb_008755_020--Hb_101034_010 Hb_101034_010--Hb_005432_020 Hb_101034_010--Hb_181013_010 Hb_101034_010--Hb_000142_090 Hb_101034_010--Hb_159124_010 Hb_101034_010--Hb_134377_070 Hb_005432_020--Hb_181013_010 Hb_005432_020--Hb_000142_090 Hb_005432_020--Hb_134377_070 Hb_005432_020--Hb_159124_010 Hb_181013_010--Hb_000142_090 Hb_181013_010--Hb_134377_070 Hb_181013_010--Hb_159124_010 Hb_000142_090--Hb_134377_070 Hb_000142_090--Hb_159124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0194634 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0251957 0.0886438

CAGE analysis