Hb_159404_010

Information

Type -
Description -
Location Contig159404: 104-961
Sequence    

Annotation

kegg
ID rcu:RCOM_0574930
description receptor serine/threonine kinase, putative
nr
ID XP_012066187.1
description PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
swissprot
ID P0CH02
description Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV=1
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0016301
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159404_010 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
2 Hb_014967_010 0.0157170963 - - -
3 Hb_020400_010 0.0757705385 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
4 Hb_008755_020 0.0899781229 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_056506_080 0.0963690089 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
6 Hb_110782_010 0.119440292 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
7 Hb_000167_070 0.1209250185 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
8 Hb_006120_160 0.1411482172 - - -
9 Hb_101034_010 0.1427689769 - - -
10 Hb_005432_020 0.1443665557 - - -
11 Hb_181013_010 0.146268001 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
12 Hb_000142_090 0.1479487878 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
13 Hb_134377_070 0.1511751372 - - -
14 Hb_114121_010 0.1548472337 - - -
15 Hb_002733_050 0.160167957 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_003927_020 0.1636525258 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
17 Hb_000346_050 0.1672588203 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
18 Hb_179183_010 0.1677379476 - - RALF-LIKE 32 family protein [Populus trichocarpa]
19 Hb_159124_010 0.1683652089 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
20 Hb_001880_020 0.1685345531 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]

Gene co-expression network

sample Hb_159404_010 Hb_159404_010 Hb_014967_010 Hb_014967_010 Hb_159404_010--Hb_014967_010 Hb_020400_010 Hb_020400_010 Hb_159404_010--Hb_020400_010 Hb_008755_020 Hb_008755_020 Hb_159404_010--Hb_008755_020 Hb_056506_080 Hb_056506_080 Hb_159404_010--Hb_056506_080 Hb_110782_010 Hb_110782_010 Hb_159404_010--Hb_110782_010 Hb_000167_070 Hb_000167_070 Hb_159404_010--Hb_000167_070 Hb_014967_010--Hb_020400_010 Hb_014967_010--Hb_008755_020 Hb_014967_010--Hb_056506_080 Hb_014967_010--Hb_110782_010 Hb_014967_010--Hb_000167_070 Hb_020400_010--Hb_110782_010 Hb_020400_010--Hb_008755_020 Hb_002733_050 Hb_002733_050 Hb_020400_010--Hb_002733_050 Hb_114121_010 Hb_114121_010 Hb_020400_010--Hb_114121_010 Hb_008755_020--Hb_056506_080 Hb_008755_020--Hb_114121_010 Hb_006120_160 Hb_006120_160 Hb_008755_020--Hb_006120_160 Hb_179183_010 Hb_179183_010 Hb_008755_020--Hb_179183_010 Hb_101034_010 Hb_101034_010 Hb_008755_020--Hb_101034_010 Hb_056506_080--Hb_006120_160 Hb_056506_080--Hb_101034_010 Hb_005432_020 Hb_005432_020 Hb_056506_080--Hb_005432_020 Hb_181013_010 Hb_181013_010 Hb_056506_080--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_056506_080--Hb_000142_090 Hb_110782_010--Hb_002733_050 Hb_006013_030 Hb_006013_030 Hb_110782_010--Hb_006013_030 Hb_169514_010 Hb_169514_010 Hb_110782_010--Hb_169514_010 Hb_001880_020 Hb_001880_020 Hb_000167_070--Hb_001880_020 Hb_003927_020 Hb_003927_020 Hb_000167_070--Hb_003927_020 Hb_001856_280 Hb_001856_280 Hb_000167_070--Hb_001856_280 Hb_005595_030 Hb_005595_030 Hb_000167_070--Hb_005595_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0338017 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0982786 0.240281

CAGE analysis