Hb_003927_020

Information

Type -
Description -
Location Contig3927: 2858-6782
Sequence    

Annotation

kegg
ID sita:101755499
description uncharacterized LOC101755499
nr
ID XP_012462800.1
description PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B2PKF7
description E3 ubiquitin-protein ligase RGLG2 OS=Glycine soja GN=glysoja_011899 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_020 0.0 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
2 Hb_000167_070 0.0877623144 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
3 Hb_001880_020 0.089515404 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
4 Hb_001355_050 0.0913705305 - - -
5 Hb_005595_030 0.0929043152 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
6 Hb_006992_030 0.1002682103 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_000346_050 0.1157467763 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
8 Hb_043792_030 0.1240291704 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
9 Hb_001856_280 0.1301600246 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_019654_170 0.1478537045 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
11 Hb_150516_010 0.1494823233 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
12 Hb_001871_030 0.1531479 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005765_020 0.1547048085 - - -
14 Hb_094002_010 0.1590416465 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
15 Hb_014967_010 0.1630986282 - - -
16 Hb_159404_010 0.1636525258 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
17 Hb_008755_020 0.1716846465 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_020400_010 0.1748558895 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
19 Hb_056506_080 0.1758328128 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
20 Hb_072173_010 0.1779248679 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]

Gene co-expression network

sample Hb_003927_020 Hb_003927_020 Hb_000167_070 Hb_000167_070 Hb_003927_020--Hb_000167_070 Hb_001880_020 Hb_001880_020 Hb_003927_020--Hb_001880_020 Hb_001355_050 Hb_001355_050 Hb_003927_020--Hb_001355_050 Hb_005595_030 Hb_005595_030 Hb_003927_020--Hb_005595_030 Hb_006992_030 Hb_006992_030 Hb_003927_020--Hb_006992_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_000167_070--Hb_001880_020 Hb_159404_010 Hb_159404_010 Hb_000167_070--Hb_159404_010 Hb_001856_280 Hb_001856_280 Hb_000167_070--Hb_001856_280 Hb_014967_010 Hb_014967_010 Hb_000167_070--Hb_014967_010 Hb_000167_070--Hb_005595_030 Hb_001880_020--Hb_005595_030 Hb_001880_020--Hb_001856_280 Hb_043792_030 Hb_043792_030 Hb_001880_020--Hb_043792_030 Hb_001880_020--Hb_001355_050 Hb_001355_050--Hb_005595_030 Hb_001355_050--Hb_006992_030 Hb_150516_010 Hb_150516_010 Hb_001355_050--Hb_150516_010 Hb_001355_050--Hb_043792_030 Hb_005595_030--Hb_006992_030 Hb_094002_010 Hb_094002_010 Hb_005595_030--Hb_094002_010 Hb_005765_020 Hb_005765_020 Hb_006992_030--Hb_005765_020 Hb_023547_020 Hb_023547_020 Hb_006992_030--Hb_023547_020 Hb_006992_030--Hb_001880_020 Hb_000346_050--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_000346_050--Hb_019654_170 Hb_000346_050--Hb_001856_280 Hb_000346_050--Hb_150516_010 Hb_000346_050--Hb_000167_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.132305 0.0636747 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.298942 0.756483

CAGE analysis