Hb_005765_020

Information

Type -
Description -
Location Contig5765: 16409-16711
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005765_020 0.0 - - -
2 Hb_006992_030 0.1020409107 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
3 Hb_058095_030 0.1029546732 - - -
4 Hb_000028_270 0.1251635971 - - -
5 Hb_002585_060 0.1509377915 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
6 Hb_003927_020 0.1547048085 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
7 Hb_032299_070 0.1683623973 - - -
8 Hb_072173_010 0.1710476911 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
9 Hb_001355_050 0.1758739637 - - -
10 Hb_000101_320 0.1788051921 - - -
11 Hb_000832_010 0.1854223853 - - hypothetical protein VITISV_005044 [Vitis vinifera]
12 Hb_000600_080 0.1854322174 - - -
13 Hb_001871_030 0.1860871295 - - conserved hypothetical protein [Ricinus communis]
14 Hb_100332_020 0.187662876 - - PREDICTED: uncharacterized protein LOC105168695 [Sesamum indicum]
15 Hb_002733_050 0.1911922584 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_004063_010 0.1923460631 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_006013_030 0.1935932974 - - -
18 Hb_001452_090 0.194181984 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
19 Hb_114121_010 0.195783939 - - -
20 Hb_001856_110 0.1962253777 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]

Gene co-expression network

sample Hb_005765_020 Hb_005765_020 Hb_006992_030 Hb_006992_030 Hb_005765_020--Hb_006992_030 Hb_058095_030 Hb_058095_030 Hb_005765_020--Hb_058095_030 Hb_000028_270 Hb_000028_270 Hb_005765_020--Hb_000028_270 Hb_002585_060 Hb_002585_060 Hb_005765_020--Hb_002585_060 Hb_003927_020 Hb_003927_020 Hb_005765_020--Hb_003927_020 Hb_032299_070 Hb_032299_070 Hb_005765_020--Hb_032299_070 Hb_001355_050 Hb_001355_050 Hb_006992_030--Hb_001355_050 Hb_006992_030--Hb_003927_020 Hb_005595_030 Hb_005595_030 Hb_006992_030--Hb_005595_030 Hb_023547_020 Hb_023547_020 Hb_006992_030--Hb_023547_020 Hb_001880_020 Hb_001880_020 Hb_006992_030--Hb_001880_020 Hb_058095_030--Hb_000028_270 Hb_058095_030--Hb_002585_060 Hb_004063_010 Hb_004063_010 Hb_058095_030--Hb_004063_010 Hb_118046_010 Hb_118046_010 Hb_058095_030--Hb_118046_010 Hb_008642_050 Hb_008642_050 Hb_058095_030--Hb_008642_050 Hb_000028_270--Hb_118046_010 Hb_000028_270--Hb_004063_010 Hb_003442_120 Hb_003442_120 Hb_000028_270--Hb_003442_120 Hb_000028_270--Hb_002585_060 Hb_002585_060--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_002585_060--Hb_003727_060 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120 Hb_000167_070 Hb_000167_070 Hb_003927_020--Hb_000167_070 Hb_003927_020--Hb_001880_020 Hb_003927_020--Hb_001355_050 Hb_003927_020--Hb_005595_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_000959_370 Hb_000959_370 Hb_032299_070--Hb_000959_370 Hb_044313_010 Hb_044313_010 Hb_032299_070--Hb_044313_010 Hb_005618_110 Hb_005618_110 Hb_032299_070--Hb_005618_110 Hb_002142_010 Hb_002142_010 Hb_032299_070--Hb_002142_010 Hb_006013_030 Hb_006013_030 Hb_032299_070--Hb_006013_030 Hb_011242_070 Hb_011242_070 Hb_032299_070--Hb_011242_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.429331 0.140692 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.532998 0.892926

CAGE analysis