Hb_000028_270

Information

Type -
Description -
Location Contig28: 249793-250955
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_270 0.0 - - -
2 Hb_058095_030 0.0778412103 - - -
3 Hb_118046_010 0.0971521005 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
4 Hb_004063_010 0.1112466865 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_003442_120 0.1205909023 - - hypothetical protein VITISV_019818 [Vitis vinifera]
6 Hb_005765_020 0.1251635971 - - -
7 Hb_002585_060 0.1286542743 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
8 Hb_003727_060 0.1472733932 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_130579_050 0.148054784 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
10 Hb_100332_020 0.160139343 - - PREDICTED: uncharacterized protein LOC105168695 [Sesamum indicum]
11 Hb_001856_110 0.1648033026 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
12 Hb_002025_240 0.1706430001 - - -
13 Hb_008642_050 0.1764841917 - - -
14 Hb_071130_020 0.178593257 - - -
15 Hb_031949_010 0.1877561682 - - -
16 Hb_006992_030 0.1895473816 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
17 Hb_001452_090 0.1939270388 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
18 Hb_000101_320 0.1946313308 - - -
19 Hb_012807_070 0.1952154218 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
20 Hb_000236_430 0.1965015014 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_270 Hb_000028_270 Hb_058095_030 Hb_058095_030 Hb_000028_270--Hb_058095_030 Hb_118046_010 Hb_118046_010 Hb_000028_270--Hb_118046_010 Hb_004063_010 Hb_004063_010 Hb_000028_270--Hb_004063_010 Hb_003442_120 Hb_003442_120 Hb_000028_270--Hb_003442_120 Hb_005765_020 Hb_005765_020 Hb_000028_270--Hb_005765_020 Hb_002585_060 Hb_002585_060 Hb_000028_270--Hb_002585_060 Hb_058095_030--Hb_002585_060 Hb_058095_030--Hb_005765_020 Hb_058095_030--Hb_004063_010 Hb_058095_030--Hb_118046_010 Hb_008642_050 Hb_008642_050 Hb_058095_030--Hb_008642_050 Hb_118046_010--Hb_003442_120 Hb_118046_010--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_118046_010--Hb_003727_060 Hb_130579_050 Hb_130579_050 Hb_118046_010--Hb_130579_050 Hb_002025_240 Hb_002025_240 Hb_118046_010--Hb_002025_240 Hb_004063_010--Hb_003727_060 Hb_004063_010--Hb_003442_120 Hb_004063_010--Hb_002585_060 Hb_003442_120--Hb_002025_240 Hb_003442_120--Hb_130579_050 Hb_003442_120--Hb_003727_060 Hb_006992_030 Hb_006992_030 Hb_005765_020--Hb_006992_030 Hb_005765_020--Hb_002585_060 Hb_003927_020 Hb_003927_020 Hb_005765_020--Hb_003927_020 Hb_032299_070 Hb_032299_070 Hb_005765_020--Hb_032299_070 Hb_002585_060--Hb_003727_060 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0781452 0.0232073 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0425947 0.10571

CAGE analysis