Hb_008642_050

Information

Type -
Description -
Location Contig8642: 51036-51669
Sequence    

Annotation

kegg
ID rcu:RCOM_0069100
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID B9T582
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0069100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008642_050 0.0 - - -
2 Hb_045785_010 0.0989484715 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
3 Hb_004899_210 0.1284090877 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
4 Hb_058095_030 0.1343924604 - - -
5 Hb_094694_010 0.1363983667 - - -
6 Hb_039547_010 0.136667809 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_000916_010 0.1368280664 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
8 Hb_003900_040 0.1384349887 - - hypothetical protein [Lotus japonicus]
9 Hb_000248_020 0.1391583185 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
10 Hb_003169_040 0.1402383489 - - -
11 Hb_007575_020 0.1409615887 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000209_010 0.142354461 - - -
13 Hb_000975_060 0.1451034739 - - -
14 Hb_151411_010 0.1471672122 - - -
15 Hb_000192_060 0.1529950426 - - -
16 Hb_099878_040 0.1534801789 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
17 Hb_179183_010 0.1594884238 - - RALF-LIKE 32 family protein [Populus trichocarpa]
18 Hb_159124_010 0.1595219258 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
19 Hb_001301_070 0.1626809154 - - -
20 Hb_006120_160 0.1704008736 - - -

Gene co-expression network

sample Hb_008642_050 Hb_008642_050 Hb_045785_010 Hb_045785_010 Hb_008642_050--Hb_045785_010 Hb_004899_210 Hb_004899_210 Hb_008642_050--Hb_004899_210 Hb_058095_030 Hb_058095_030 Hb_008642_050--Hb_058095_030 Hb_094694_010 Hb_094694_010 Hb_008642_050--Hb_094694_010 Hb_039547_010 Hb_039547_010 Hb_008642_050--Hb_039547_010 Hb_000916_010 Hb_000916_010 Hb_008642_050--Hb_000916_010 Hb_007575_020 Hb_007575_020 Hb_045785_010--Hb_007575_020 Hb_045785_010--Hb_004899_210 Hb_017640_010 Hb_017640_010 Hb_045785_010--Hb_017640_010 Hb_003169_040 Hb_003169_040 Hb_045785_010--Hb_003169_040 Hb_003900_040 Hb_003900_040 Hb_045785_010--Hb_003900_040 Hb_004899_210--Hb_003900_040 Hb_144027_010 Hb_144027_010 Hb_004899_210--Hb_144027_010 Hb_004899_210--Hb_007575_020 Hb_001250_030 Hb_001250_030 Hb_004899_210--Hb_001250_030 Hb_004899_210--Hb_017640_010 Hb_000028_270 Hb_000028_270 Hb_058095_030--Hb_000028_270 Hb_002585_060 Hb_002585_060 Hb_058095_030--Hb_002585_060 Hb_005765_020 Hb_005765_020 Hb_058095_030--Hb_005765_020 Hb_004063_010 Hb_004063_010 Hb_058095_030--Hb_004063_010 Hb_118046_010 Hb_118046_010 Hb_058095_030--Hb_118046_010 Hb_000248_020 Hb_000248_020 Hb_094694_010--Hb_000248_020 Hb_000975_060 Hb_000975_060 Hb_094694_010--Hb_000975_060 Hb_094694_010--Hb_039547_010 Hb_094694_010--Hb_000916_010 Hb_099878_040 Hb_099878_040 Hb_094694_010--Hb_099878_040 Hb_000209_010 Hb_000209_010 Hb_094694_010--Hb_000209_010 Hb_039547_010--Hb_000916_010 Hb_039547_010--Hb_000209_010 Hb_151411_010 Hb_151411_010 Hb_039547_010--Hb_151411_010 Hb_000192_060 Hb_000192_060 Hb_039547_010--Hb_000192_060 Hb_039547_010--Hb_000248_020 Hb_000916_010--Hb_000209_010 Hb_000916_010--Hb_151411_010 Hb_000916_010--Hb_000192_060 Hb_000916_010--Hb_000248_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.281435 0.0393978 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.109476 0.677123

CAGE analysis