Hb_045785_010

Information

Type -
Description -
Location Contig45785: 13-1073
Sequence    

Annotation

kegg
ID pda:103712006
description uncharacterized LOC103712006
nr
ID XP_012068520.1
description PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045785_010 0.0 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
2 Hb_008642_050 0.0989484715 - - -
3 Hb_007575_020 0.1189565233 - - cytochrome P450, putative [Ricinus communis]
4 Hb_004899_210 0.140212301 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
5 Hb_017640_010 0.1532425352 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
6 Hb_003169_040 0.1546884114 - - -
7 Hb_003900_040 0.1580272224 - - hypothetical protein [Lotus japonicus]
8 Hb_144027_010 0.1588598156 - - -
9 Hb_000224_250 0.1733795754 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
10 Hb_000248_020 0.1739711022 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
11 Hb_094694_010 0.1740091916 - - -
12 Hb_117001_010 0.174635786 - - -
13 Hb_005852_010 0.1758239273 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_099878_040 0.180258985 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
15 Hb_000975_060 0.1835418662 - - -
16 Hb_002876_010 0.1873637698 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_001205_170 0.1874136456 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
18 Hb_101778_010 0.187607656 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_039547_010 0.1887196631 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
20 Hb_000916_010 0.1890255885 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]

Gene co-expression network

sample Hb_045785_010 Hb_045785_010 Hb_008642_050 Hb_008642_050 Hb_045785_010--Hb_008642_050 Hb_007575_020 Hb_007575_020 Hb_045785_010--Hb_007575_020 Hb_004899_210 Hb_004899_210 Hb_045785_010--Hb_004899_210 Hb_017640_010 Hb_017640_010 Hb_045785_010--Hb_017640_010 Hb_003169_040 Hb_003169_040 Hb_045785_010--Hb_003169_040 Hb_003900_040 Hb_003900_040 Hb_045785_010--Hb_003900_040 Hb_008642_050--Hb_004899_210 Hb_058095_030 Hb_058095_030 Hb_008642_050--Hb_058095_030 Hb_094694_010 Hb_094694_010 Hb_008642_050--Hb_094694_010 Hb_039547_010 Hb_039547_010 Hb_008642_050--Hb_039547_010 Hb_000916_010 Hb_000916_010 Hb_008642_050--Hb_000916_010 Hb_000269_040 Hb_000269_040 Hb_007575_020--Hb_000269_040 Hb_007575_020--Hb_004899_210 Hb_000289_090 Hb_000289_090 Hb_007575_020--Hb_000289_090 Hb_007575_020--Hb_008642_050 Hb_007575_020--Hb_017640_010 Hb_004899_210--Hb_003900_040 Hb_144027_010 Hb_144027_010 Hb_004899_210--Hb_144027_010 Hb_001250_030 Hb_001250_030 Hb_004899_210--Hb_001250_030 Hb_004899_210--Hb_017640_010 Hb_007575_010 Hb_007575_010 Hb_017640_010--Hb_007575_010 Hb_144838_010 Hb_144838_010 Hb_017640_010--Hb_144838_010 Hb_000672_130 Hb_000672_130 Hb_017640_010--Hb_000672_130 Hb_099878_040 Hb_099878_040 Hb_017640_010--Hb_099878_040 Hb_008680_010 Hb_008680_010 Hb_017640_010--Hb_008680_010 Hb_000512_050 Hb_000512_050 Hb_003169_040--Hb_000512_050 Hb_005623_060 Hb_005623_060 Hb_003169_040--Hb_005623_060 Hb_180214_010 Hb_180214_010 Hb_003169_040--Hb_180214_010 Hb_150516_010 Hb_150516_010 Hb_003169_040--Hb_150516_010 Hb_032717_090 Hb_032717_090 Hb_003169_040--Hb_032717_090 Hb_003169_040--Hb_003900_040 Hb_003900_040--Hb_144027_010 Hb_003900_040--Hb_180214_010 Hb_003900_040--Hb_032717_090 Hb_003900_040--Hb_001250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.111956 0.016717 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0161718 0.246635

CAGE analysis