Hb_008680_010

Information

Type -
Description -
Location Contig8680: 44-1370
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008680_010 0.0 - - -
2 Hb_004052_130 0.1249340476 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
3 Hb_017640_010 0.1315493737 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
4 Hb_004445_030 0.1418480461 - - conserved hypothetical protein [Ricinus communis]
5 Hb_144838_010 0.1420653649 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
6 Hb_002598_030 0.1442847559 - - -
7 Hb_032717_090 0.1451826117 - - conserved hypothetical protein [Ricinus communis]
8 Hb_147604_010 0.1545434624 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_007575_010 0.1572058748 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
10 Hb_000710_110 0.1648784175 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
11 Hb_000108_030 0.1650184197 - - -
12 Hb_002260_210 0.1650196098 - - unnamed protein product [Vitis vinifera]
13 Hb_006221_020 0.1650196152 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_010023_020 0.1671620762 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_006617_030 0.1671841974 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_002020_030 0.1673591866 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_030085_050 0.167529365 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
18 Hb_000266_070 0.1675857256 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
19 Hb_159777_010 0.1678149362 - - JHL22C18.10 [Jatropha curcas]
20 Hb_073373_010 0.1680813995 - - hypothetical protein JCGZ_11284 [Jatropha curcas]

Gene co-expression network

sample Hb_008680_010 Hb_008680_010 Hb_004052_130 Hb_004052_130 Hb_008680_010--Hb_004052_130 Hb_017640_010 Hb_017640_010 Hb_008680_010--Hb_017640_010 Hb_004445_030 Hb_004445_030 Hb_008680_010--Hb_004445_030 Hb_144838_010 Hb_144838_010 Hb_008680_010--Hb_144838_010 Hb_002598_030 Hb_002598_030 Hb_008680_010--Hb_002598_030 Hb_032717_090 Hb_032717_090 Hb_008680_010--Hb_032717_090 Hb_004052_130--Hb_004445_030 Hb_009355_010 Hb_009355_010 Hb_004052_130--Hb_009355_010 Hb_000311_130 Hb_000311_130 Hb_004052_130--Hb_000311_130 Hb_010623_010 Hb_010623_010 Hb_004052_130--Hb_010623_010 Hb_000710_100 Hb_000710_100 Hb_004052_130--Hb_000710_100 Hb_002260_210 Hb_002260_210 Hb_004052_130--Hb_002260_210 Hb_007575_010 Hb_007575_010 Hb_017640_010--Hb_007575_010 Hb_017640_010--Hb_144838_010 Hb_000672_130 Hb_000672_130 Hb_017640_010--Hb_000672_130 Hb_099878_040 Hb_099878_040 Hb_017640_010--Hb_099878_040 Hb_004899_210 Hb_004899_210 Hb_017640_010--Hb_004899_210 Hb_054127_020 Hb_054127_020 Hb_004445_030--Hb_054127_020 Hb_047923_030 Hb_047923_030 Hb_004445_030--Hb_047923_030 Hb_002576_010 Hb_002576_010 Hb_004445_030--Hb_002576_010 Hb_004445_030--Hb_009355_010 Hb_004445_030--Hb_144838_010 Hb_144838_010--Hb_007575_010 Hb_144838_010--Hb_002598_030 Hb_144838_010--Hb_000672_130 Hb_147604_010 Hb_147604_010 Hb_144838_010--Hb_147604_010 Hb_001250_030 Hb_001250_030 Hb_144838_010--Hb_001250_030 Hb_002598_030--Hb_147604_010 Hb_001542_010 Hb_001542_010 Hb_002598_030--Hb_001542_010 Hb_002598_030--Hb_001250_030 Hb_000432_020 Hb_000432_020 Hb_002598_030--Hb_000432_020 Hb_180214_010 Hb_180214_010 Hb_032717_090--Hb_180214_010 Hb_003900_040 Hb_003900_040 Hb_032717_090--Hb_003900_040 Hb_003169_040 Hb_003169_040 Hb_032717_090--Hb_003169_040 Hb_001383_080 Hb_001383_080 Hb_032717_090--Hb_001383_080 Hb_004235_020 Hb_004235_020 Hb_032717_090--Hb_004235_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.606211 0 0.0510218 0 0.0700337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.102657 3.36639

CAGE analysis