Hb_002598_030

Information

Type -
Description -
Location Contig2598: 28768-30228
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26925: 7000-51283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002598_030 0.0 - - -
2 Hb_147604_010 0.0339394858 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
3 Hb_001542_010 0.075707678 - - hypothetical protein, partial [Pseudomonas fluorescens]
4 Hb_144838_010 0.1257546091 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
5 Hb_001250_030 0.1333798548 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000432_020 0.1402557977 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
7 Hb_008680_010 0.1442847559 - - -
8 Hb_004445_030 0.1459947381 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007575_010 0.1580948578 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
10 Hb_093388_010 0.1584567956 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
11 Hb_017640_010 0.1592109891 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
12 Hb_001174_050 0.1598303934 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_006616_070 0.1648216951 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
14 Hb_003414_040 0.1656895152 - - hypothetical protein VITISV_016691 [Vitis vinifera]
15 Hb_047923_030 0.1660385288 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
16 Hb_002576_010 0.1668885987 - - -
17 Hb_003311_020 0.1689383605 - - conserved hypothetical protein [Ricinus communis]
18 Hb_151401_010 0.1718045373 - - -
19 Hb_006827_010 0.1740800342 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
20 Hb_149345_010 0.1743874164 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002598_030 Hb_002598_030 Hb_147604_010 Hb_147604_010 Hb_002598_030--Hb_147604_010 Hb_001542_010 Hb_001542_010 Hb_002598_030--Hb_001542_010 Hb_144838_010 Hb_144838_010 Hb_002598_030--Hb_144838_010 Hb_001250_030 Hb_001250_030 Hb_002598_030--Hb_001250_030 Hb_000432_020 Hb_000432_020 Hb_002598_030--Hb_000432_020 Hb_008680_010 Hb_008680_010 Hb_002598_030--Hb_008680_010 Hb_147604_010--Hb_001542_010 Hb_147604_010--Hb_144838_010 Hb_147604_010--Hb_000432_020 Hb_147604_010--Hb_001250_030 Hb_004445_030 Hb_004445_030 Hb_147604_010--Hb_004445_030 Hb_002447_100 Hb_002447_100 Hb_001542_010--Hb_002447_100 Hb_149345_010 Hb_149345_010 Hb_001542_010--Hb_149345_010 Hb_001542_010--Hb_001250_030 Hb_003311_020 Hb_003311_020 Hb_001542_010--Hb_003311_020 Hb_007575_010 Hb_007575_010 Hb_144838_010--Hb_007575_010 Hb_017640_010 Hb_017640_010 Hb_144838_010--Hb_017640_010 Hb_000672_130 Hb_000672_130 Hb_144838_010--Hb_000672_130 Hb_144838_010--Hb_001250_030 Hb_093388_010 Hb_093388_010 Hb_001250_030--Hb_093388_010 Hb_029510_060 Hb_029510_060 Hb_001250_030--Hb_029510_060 Hb_023738_010 Hb_023738_010 Hb_001250_030--Hb_023738_010 Hb_001250_030--Hb_003311_020 Hb_003414_040 Hb_003414_040 Hb_001250_030--Hb_003414_040 Hb_001250_030--Hb_000432_020 Hb_007533_050 Hb_007533_050 Hb_000432_020--Hb_007533_050 Hb_000432_020--Hb_003414_040 Hb_000432_020--Hb_003311_020 Hb_000432_020--Hb_093388_010 Hb_151401_010 Hb_151401_010 Hb_000432_020--Hb_151401_010 Hb_004052_130 Hb_004052_130 Hb_008680_010--Hb_004052_130 Hb_008680_010--Hb_017640_010 Hb_008680_010--Hb_004445_030 Hb_008680_010--Hb_144838_010 Hb_032717_090 Hb_032717_090 Hb_008680_010--Hb_032717_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0823295 0 0.0333388 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0428636 0.659577

CAGE analysis