Hb_007533_050

Information

Type -
Description -
Location Contig7533: 75299-80256
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56943: 78374-78828 , PASA_asmbl_56944: 76415-76670 , PASA_asmbl_56945: 79073-79566 , PASA_asmbl_56946: 77118-77495
cDNA
(Sanger)
(ID:Location)		 028_J11r.ab1: 73390-82552

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007533_050 0.0 - - -
2 Hb_032016_010 0.0764809957 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
3 Hb_000432_020 0.0950210409 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
4 Hb_003311_020 0.1011240916 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000567_270 0.1095893051 - - hypothetical protein L484_017162 [Morus notabilis]
6 Hb_049285_010 0.1163340496 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
7 Hb_006455_020 0.120940372 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
8 Hb_057716_010 0.1223489115 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
9 Hb_062192_050 0.1223571222 - - -
10 Hb_005678_030 0.1251119668 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
11 Hb_001856_290 0.1330241338 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
12 Hb_003414_040 0.1340800345 - - hypothetical protein VITISV_016691 [Vitis vinifera]
13 Hb_000644_020 0.1360151607 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_001999_330 0.1363090007 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
15 Hb_000135_080 0.138282577 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
16 Hb_009851_090 0.1391882842 - - Protein ABIL2, putative [Ricinus communis]
17 Hb_093388_010 0.144621505 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_151401_010 0.14642102 - - -
19 Hb_003073_030 0.1468479219 - - conserved hypothetical protein [Ricinus communis]
20 Hb_040245_010 0.1494996924 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_007533_050 Hb_007533_050 Hb_032016_010 Hb_032016_010 Hb_007533_050--Hb_032016_010 Hb_000432_020 Hb_000432_020 Hb_007533_050--Hb_000432_020 Hb_003311_020 Hb_003311_020 Hb_007533_050--Hb_003311_020 Hb_000567_270 Hb_000567_270 Hb_007533_050--Hb_000567_270 Hb_049285_010 Hb_049285_010 Hb_007533_050--Hb_049285_010 Hb_006455_020 Hb_006455_020 Hb_007533_050--Hb_006455_020 Hb_009851_090 Hb_009851_090 Hb_032016_010--Hb_009851_090 Hb_032016_010--Hb_003311_020 Hb_003073_030 Hb_003073_030 Hb_032016_010--Hb_003073_030 Hb_040245_010 Hb_040245_010 Hb_032016_010--Hb_040245_010 Hb_032016_010--Hb_000567_270 Hb_003414_040 Hb_003414_040 Hb_000432_020--Hb_003414_040 Hb_000432_020--Hb_003311_020 Hb_093388_010 Hb_093388_010 Hb_000432_020--Hb_093388_010 Hb_151401_010 Hb_151401_010 Hb_000432_020--Hb_151401_010 Hb_001250_030 Hb_001250_030 Hb_000432_020--Hb_001250_030 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_003311_020--Hb_000567_270 Hb_003311_020--Hb_009851_090 Hb_000644_020 Hb_000644_020 Hb_000567_270--Hb_000644_020 Hb_000567_270--Hb_009851_090 Hb_000567_270--Hb_006455_020 Hb_006356_030 Hb_006356_030 Hb_049285_010--Hb_006356_030 Hb_000923_110 Hb_000923_110 Hb_049285_010--Hb_000923_110 Hb_049285_010--Hb_000567_270 Hb_049285_010--Hb_000432_020 Hb_030987_010 Hb_030987_010 Hb_049285_010--Hb_030987_010 Hb_020831_070 Hb_020831_070 Hb_006455_020--Hb_020831_070 Hb_000476_030 Hb_000476_030 Hb_006455_020--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_006455_020--Hb_005678_030 Hb_006455_020--Hb_000644_020 Hb_000522_030 Hb_000522_030 Hb_006455_020--Hb_000522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0212587 0.0202141 0.0453254 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.074075 0.651778

CAGE analysis