Hb_030987_010

Information

Type -
Description -
Location Contig30987: 13271-19907
Sequence    

Annotation

kegg
ID tcc:TCM_003698
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061DW51
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030987_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_010964_030 0.0272540103 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
3 Hb_000907_050 0.0982631786 - - -
4 Hb_003772_010 0.1200976306 - - polyprotein [Oryza australiensis]
5 Hb_098361_010 0.1235237279 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
6 Hb_000581_070 0.1235264474 - - -
7 Hb_007668_030 0.1235317082 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
8 Hb_001988_040 0.1235590088 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
9 Hb_060300_010 0.1235746264 - - hypothetical protein F383_16817 [Gossypium arboreum]
10 Hb_007120_110 0.1236129843 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_011980_030 0.1236686339 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001461_030 0.1237097809 - - -
13 Hb_024415_010 0.1237388561 - - -
14 Hb_000832_260 0.1237638539 - - Protein gar2, putative [Ricinus communis]
15 Hb_109050_010 0.1237638539 - - -
16 Hb_004048_040 0.1238161844 - - -
17 Hb_000573_080 0.1238402806 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
18 Hb_047399_010 0.1239029093 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
19 Hb_100500_010 0.1239659627 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
20 Hb_001821_040 0.1239781278 - - -

Gene co-expression network

sample Hb_030987_010 Hb_030987_010 Hb_010964_030 Hb_010964_030 Hb_030987_010--Hb_010964_030 Hb_000907_050 Hb_000907_050 Hb_030987_010--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_030987_010--Hb_003772_010 Hb_098361_010 Hb_098361_010 Hb_030987_010--Hb_098361_010 Hb_000581_070 Hb_000581_070 Hb_030987_010--Hb_000581_070 Hb_007668_030 Hb_007668_030 Hb_030987_010--Hb_007668_030 Hb_010964_030--Hb_000907_050 Hb_010964_030--Hb_003772_010 Hb_001981_020 Hb_001981_020 Hb_010964_030--Hb_001981_020 Hb_186580_020 Hb_186580_020 Hb_010964_030--Hb_186580_020 Hb_027970_010 Hb_027970_010 Hb_010964_030--Hb_027970_010 Hb_000907_050--Hb_003772_010 Hb_001401_030 Hb_001401_030 Hb_000907_050--Hb_001401_030 Hb_024248_010 Hb_024248_010 Hb_000907_050--Hb_024248_010 Hb_062192_050 Hb_062192_050 Hb_000907_050--Hb_062192_050 Hb_003772_010--Hb_001401_030 Hb_003772_010--Hb_062192_050 Hb_003772_010--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_003772_010--Hb_005676_020 Hb_098361_010--Hb_000581_070 Hb_098361_010--Hb_007668_030 Hb_001988_040 Hb_001988_040 Hb_098361_010--Hb_001988_040 Hb_060300_010 Hb_060300_010 Hb_098361_010--Hb_060300_010 Hb_007120_110 Hb_007120_110 Hb_098361_010--Hb_007120_110 Hb_001461_030 Hb_001461_030 Hb_098361_010--Hb_001461_030 Hb_000581_070--Hb_007668_030 Hb_000581_070--Hb_007120_110 Hb_000581_070--Hb_001988_040 Hb_000581_070--Hb_060300_010 Hb_000581_070--Hb_001461_030 Hb_007668_030--Hb_007120_110 Hb_007668_030--Hb_001988_040 Hb_007668_030--Hb_060300_010 Hb_007668_030--Hb_001461_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00257182 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0149467 0.0676916

CAGE analysis