Hb_001401_030

Information

Type -
Description -
Location Contig1401: 26284-28950
Sequence    

Annotation

kegg
ID pxb:103960221
description uncharacterized LOC103960221
nr
ID XP_012091716.1
description PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A022RNQ3
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv11b017233mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001401_030 0.0 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
2 Hb_024248_010 0.0467726261 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
3 Hb_005676_020 0.0572155546 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
4 Hb_000907_050 0.0591662007 - - -
5 Hb_003772_010 0.0814176203 - - polyprotein [Oryza australiensis]
6 Hb_062192_050 0.0898551223 - - -
7 Hb_009826_010 0.1073119835 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000029_220 0.1112916619 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
9 Hb_003427_040 0.1118212713 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_001452_150 0.1198567932 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
11 Hb_027969_010 0.1281996831 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
12 Hb_004274_010 0.1375942385 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
13 Hb_057716_010 0.1458163128 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_010964_030 0.1542348978 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
15 Hb_030987_010 0.1560883016 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_007533_050 0.1692369144 - - -
17 Hb_000811_090 0.1723584056 - - hypothetical protein VITISV_043745 [Vitis vinifera]
18 Hb_004113_030 0.1799824361 - - -
19 Hb_000844_060 0.1856439319 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
20 Hb_001999_330 0.1881264213 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]

Gene co-expression network

sample Hb_001401_030 Hb_001401_030 Hb_024248_010 Hb_024248_010 Hb_001401_030--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_001401_030--Hb_005676_020 Hb_000907_050 Hb_000907_050 Hb_001401_030--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_001401_030--Hb_003772_010 Hb_062192_050 Hb_062192_050 Hb_001401_030--Hb_062192_050 Hb_009826_010 Hb_009826_010 Hb_001401_030--Hb_009826_010 Hb_024248_010--Hb_005676_020 Hb_000029_220 Hb_000029_220 Hb_024248_010--Hb_000029_220 Hb_024248_010--Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_024248_010--Hb_003427_040 Hb_001452_150 Hb_001452_150 Hb_024248_010--Hb_001452_150 Hb_027969_010 Hb_027969_010 Hb_005676_020--Hb_027969_010 Hb_005676_020--Hb_000029_220 Hb_005676_020--Hb_000907_050 Hb_005676_020--Hb_062192_050 Hb_000907_050--Hb_003772_010 Hb_000907_050--Hb_024248_010 Hb_000907_050--Hb_062192_050 Hb_030987_010 Hb_030987_010 Hb_000907_050--Hb_030987_010 Hb_010964_030 Hb_010964_030 Hb_000907_050--Hb_010964_030 Hb_003772_010--Hb_062192_050 Hb_003772_010--Hb_030987_010 Hb_003772_010--Hb_024248_010 Hb_003772_010--Hb_005676_020 Hb_057716_010 Hb_057716_010 Hb_062192_050--Hb_057716_010 Hb_062192_050--Hb_024248_010 Hb_009826_010--Hb_003427_040 Hb_009826_010--Hb_001452_150 Hb_004274_010 Hb_004274_010 Hb_009826_010--Hb_004274_010 Hb_009826_010--Hb_000029_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0105768 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00954023 0.100133

CAGE analysis