Hb_001452_150

Information

Type -
Description -
Location Contig1452: 282137-284191
Sequence    

Annotation

kegg
ID vvi:104879858
description uncharacterized LOC104879858
nr
ID XP_010652563.1
description PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BJW1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001452_150 0.0 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
2 Hb_003427_040 0.0125086739 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
3 Hb_009826_010 0.0149164603 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_004274_010 0.018878516 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
5 Hb_024248_010 0.0816693071 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
6 Hb_000029_220 0.0882992467 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
7 Hb_011476_010 0.0992490109 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
8 Hb_001401_030 0.1198567932 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
9 Hb_003186_050 0.1228135038 - - -
10 Hb_167457_010 0.1285780084 - - hypothetical protein glysoja_045622, partial [Glycine soja]
11 Hb_005676_020 0.131840579 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
12 Hb_000907_050 0.1325488885 - - -
13 Hb_000914_010 0.1327045215 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
14 Hb_094484_010 0.1353751824 - - kinase, putative [Ricinus communis]
15 Hb_051410_010 0.1428439883 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
16 Hb_027969_010 0.1494376988 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
17 Hb_062192_050 0.1561228799 - - -
18 Hb_010964_030 0.1674807594 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
19 Hb_000811_090 0.1792095176 - - hypothetical protein VITISV_043745 [Vitis vinifera]
20 Hb_010721_040 0.1794841516 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001452_150 Hb_001452_150 Hb_003427_040 Hb_003427_040 Hb_001452_150--Hb_003427_040 Hb_009826_010 Hb_009826_010 Hb_001452_150--Hb_009826_010 Hb_004274_010 Hb_004274_010 Hb_001452_150--Hb_004274_010 Hb_024248_010 Hb_024248_010 Hb_001452_150--Hb_024248_010 Hb_000029_220 Hb_000029_220 Hb_001452_150--Hb_000029_220 Hb_011476_010 Hb_011476_010 Hb_001452_150--Hb_011476_010 Hb_003427_040--Hb_009826_010 Hb_003427_040--Hb_004274_010 Hb_003427_040--Hb_024248_010 Hb_003427_040--Hb_000029_220 Hb_003427_040--Hb_011476_010 Hb_009826_010--Hb_004274_010 Hb_009826_010--Hb_024248_010 Hb_009826_010--Hb_000029_220 Hb_001401_030 Hb_001401_030 Hb_009826_010--Hb_001401_030 Hb_004274_010--Hb_011476_010 Hb_004274_010--Hb_000029_220 Hb_004274_010--Hb_024248_010 Hb_024248_010--Hb_001401_030 Hb_005676_020 Hb_005676_020 Hb_024248_010--Hb_005676_020 Hb_024248_010--Hb_000029_220 Hb_027969_010 Hb_027969_010 Hb_000029_220--Hb_027969_010 Hb_000029_220--Hb_005676_020 Hb_003186_050 Hb_003186_050 Hb_011476_010--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_011476_010--Hb_167457_010 Hb_000914_010 Hb_000914_010 Hb_011476_010--Hb_000914_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00953162 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00867542 0.0457209

CAGE analysis