Hb_011476_010

Information

Type -
Description -
Location Contig11476: 4732-5397
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011476_010 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_003186_050 0.0532830221 - - -
3 Hb_167457_010 0.0636853585 - - hypothetical protein glysoja_045622, partial [Glycine soja]
4 Hb_004274_010 0.0825945924 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
5 Hb_001452_150 0.0992490109 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
6 Hb_000914_010 0.1061810331 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
7 Hb_003427_040 0.1072544812 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_000946_130 0.1087968293 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
9 Hb_051410_010 0.1100131239 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
10 Hb_009826_010 0.111672554 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_094484_010 0.15911032 - - kinase, putative [Ricinus communis]
12 Hb_000649_090 0.1594300794 - - unnamed protein product [Vitis vinifera]
13 Hb_000029_220 0.1634227856 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
14 Hb_005843_060 0.1701044517 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
15 Hb_165396_010 0.1790229536 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_010721_040 0.1793372651 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
17 Hb_024248_010 0.1794074117 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
18 Hb_002542_050 0.1795230925 - - -
19 Hb_003450_010 0.1859863689 - - -
20 Hb_016835_020 0.1886781688 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_011476_010 Hb_011476_010 Hb_003186_050 Hb_003186_050 Hb_011476_010--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_011476_010--Hb_167457_010 Hb_004274_010 Hb_004274_010 Hb_011476_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_011476_010--Hb_001452_150 Hb_000914_010 Hb_000914_010 Hb_011476_010--Hb_000914_010 Hb_003427_040 Hb_003427_040 Hb_011476_010--Hb_003427_040 Hb_003186_050--Hb_167457_010 Hb_003186_050--Hb_004274_010 Hb_003186_050--Hb_001452_150 Hb_000946_130 Hb_000946_130 Hb_003186_050--Hb_000946_130 Hb_003186_050--Hb_003427_040 Hb_167457_010--Hb_004274_010 Hb_167457_010--Hb_001452_150 Hb_005843_060 Hb_005843_060 Hb_167457_010--Hb_005843_060 Hb_167457_010--Hb_000946_130 Hb_004274_010--Hb_001452_150 Hb_004274_010--Hb_003427_040 Hb_009826_010 Hb_009826_010 Hb_004274_010--Hb_009826_010 Hb_000029_220 Hb_000029_220 Hb_004274_010--Hb_000029_220 Hb_024248_010 Hb_024248_010 Hb_004274_010--Hb_024248_010 Hb_001452_150--Hb_003427_040 Hb_001452_150--Hb_009826_010 Hb_001452_150--Hb_024248_010 Hb_001452_150--Hb_000029_220 Hb_051410_010 Hb_051410_010 Hb_000914_010--Hb_051410_010 Hb_000649_090 Hb_000649_090 Hb_000914_010--Hb_000649_090 Hb_000914_010--Hb_004274_010 Hb_010721_040 Hb_010721_040 Hb_000914_010--Hb_010721_040 Hb_000914_010--Hb_000029_220 Hb_003427_040--Hb_009826_010 Hb_003427_040--Hb_024248_010 Hb_003427_040--Hb_000029_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.110784 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.108536 0.336106

CAGE analysis