Hb_003186_050

Information

Type -
Description -
Location Contig3186: 79486-80000
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003186_050 0.0 - - -
2 Hb_167457_010 0.0104763989 - - hypothetical protein glysoja_045622, partial [Glycine soja]
3 Hb_011476_010 0.0532830221 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_004274_010 0.1116966248 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
5 Hb_001452_150 0.1228135038 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
6 Hb_000946_130 0.1243339094 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
7 Hb_003427_040 0.1260881206 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_009826_010 0.1307768998 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_005843_060 0.1361159085 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
10 Hb_000914_010 0.1587865977 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
11 Hb_051410_010 0.1621708575 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
12 Hb_016835_020 0.1659000371 - - unnamed protein product [Coffea canephora]
13 Hb_125116_020 0.1679435487 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
14 Hb_002542_050 0.1726919069 - - -
15 Hb_165396_010 0.1735425531 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_094484_010 0.1788757494 - - kinase, putative [Ricinus communis]
17 Hb_003450_010 0.181951959 - - -
18 Hb_151870_010 0.2005234344 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_000029_220 0.2007751786 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
20 Hb_024248_010 0.2014320798 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]

Gene co-expression network

sample Hb_003186_050 Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_003186_050--Hb_167457_010 Hb_011476_010 Hb_011476_010 Hb_003186_050--Hb_011476_010 Hb_004274_010 Hb_004274_010 Hb_003186_050--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_003186_050--Hb_001452_150 Hb_000946_130 Hb_000946_130 Hb_003186_050--Hb_000946_130 Hb_003427_040 Hb_003427_040 Hb_003186_050--Hb_003427_040 Hb_167457_010--Hb_011476_010 Hb_167457_010--Hb_004274_010 Hb_167457_010--Hb_001452_150 Hb_005843_060 Hb_005843_060 Hb_167457_010--Hb_005843_060 Hb_167457_010--Hb_000946_130 Hb_011476_010--Hb_004274_010 Hb_011476_010--Hb_001452_150 Hb_000914_010 Hb_000914_010 Hb_011476_010--Hb_000914_010 Hb_011476_010--Hb_003427_040 Hb_004274_010--Hb_001452_150 Hb_004274_010--Hb_003427_040 Hb_009826_010 Hb_009826_010 Hb_004274_010--Hb_009826_010 Hb_000029_220 Hb_000029_220 Hb_004274_010--Hb_000029_220 Hb_024248_010 Hb_024248_010 Hb_004274_010--Hb_024248_010 Hb_001452_150--Hb_003427_040 Hb_001452_150--Hb_009826_010 Hb_001452_150--Hb_024248_010 Hb_001452_150--Hb_000029_220 Hb_165396_010 Hb_165396_010 Hb_000946_130--Hb_165396_010 Hb_002542_050 Hb_002542_050 Hb_000946_130--Hb_002542_050 Hb_000946_130--Hb_011476_010 Hb_002157_060 Hb_002157_060 Hb_000946_130--Hb_002157_060 Hb_003427_040--Hb_009826_010 Hb_003427_040--Hb_024248_010 Hb_003427_040--Hb_000029_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.457826 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.663668 1.63769

CAGE analysis