Hb_002157_060

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2157: 37626-39822
Sequence    

Annotation

kegg
ID rcu:RCOM_1183250
description WRKY transcription factor, putative
nr
ID XP_012065723.1
description PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
swissprot
ID Q9C9F0
description Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1
trembl
ID S5CKA9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY34 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_060 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
2 Hb_002042_040 0.0176536864 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
3 Hb_165396_010 0.0625601558 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_002542_050 0.0649051695 - - -
5 Hb_000946_130 0.1275152491 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
6 Hb_169960_010 0.1493755569 - - -
7 Hb_000014_200 0.1613861592 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
8 Hb_104835_010 0.1644387437 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
9 Hb_000009_430 0.1799036405 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003858_080 0.1947079219 - - Germin-like protein 2 [Theobroma cacao]
11 Hb_003983_010 0.1957655831 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
12 Hb_159809_080 0.2024215994 - - multidrug resistance pump, putative [Ricinus communis]
13 Hb_179138_010 0.208263011 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_003450_010 0.2084501724 - - -
15 Hb_011849_020 0.2168854133 - - dioxygenase family protein [Populus trichocarpa]
16 Hb_000300_650 0.2185922671 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
17 Hb_000138_080 0.2202525094 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000649_090 0.2231137367 - - unnamed protein product [Vitis vinifera]
19 Hb_000117_150 0.23041793 - - hypothetical protein RCOM_0079810 [Ricinus communis]
20 Hb_003688_120 0.2308159904 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_002157_060 Hb_002157_060 Hb_002042_040 Hb_002042_040 Hb_002157_060--Hb_002042_040 Hb_165396_010 Hb_165396_010 Hb_002157_060--Hb_165396_010 Hb_002542_050 Hb_002542_050 Hb_002157_060--Hb_002542_050 Hb_000946_130 Hb_000946_130 Hb_002157_060--Hb_000946_130 Hb_169960_010 Hb_169960_010 Hb_002157_060--Hb_169960_010 Hb_000014_200 Hb_000014_200 Hb_002157_060--Hb_000014_200 Hb_002042_040--Hb_165396_010 Hb_002042_040--Hb_002542_050 Hb_002042_040--Hb_000946_130 Hb_104835_010 Hb_104835_010 Hb_002042_040--Hb_104835_010 Hb_002042_040--Hb_169960_010 Hb_165396_010--Hb_002542_050 Hb_165396_010--Hb_000946_130 Hb_165396_010--Hb_104835_010 Hb_165396_010--Hb_169960_010 Hb_002542_050--Hb_000946_130 Hb_002542_050--Hb_104835_010 Hb_003186_050 Hb_003186_050 Hb_002542_050--Hb_003186_050 Hb_011476_010 Hb_011476_010 Hb_000946_130--Hb_011476_010 Hb_000946_130--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_000946_130--Hb_167457_010 Hb_169960_010--Hb_000014_200 Hb_005207_040 Hb_005207_040 Hb_169960_010--Hb_005207_040 Hb_003688_120 Hb_003688_120 Hb_169960_010--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_169960_010--Hb_014102_010 Hb_001144_030 Hb_001144_030 Hb_169960_010--Hb_001144_030 Hb_002559_020 Hb_002559_020 Hb_169960_010--Hb_002559_020 Hb_000014_200--Hb_001144_030 Hb_000014_200--Hb_005207_040 Hb_000014_200--Hb_002559_020 Hb_000300_650 Hb_000300_650 Hb_000014_200--Hb_000300_650 Hb_060783_010 Hb_060783_010 Hb_000014_200--Hb_060783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0966181 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.08784 0.092537

CAGE analysis