Hb_000300_650

Information

Type -
Description -
Location Contig300: 593571-593750
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_492181
description hypothetical protein
nr
ID XP_012070443.1
description PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
swissprot
ID Q9LJD9
description Arabinogalactan peptide 12 OS=Arabidopsis thaliana GN=AGP12 PE=1 SV=1
trembl
ID A0A067KU06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02716 PE=4 SV=1
Gene Ontology
ID GO:0005886
description arabinogalactan peptide 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31637: 593306-593852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_650 0.0 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
2 Hb_022973_010 0.1304196717 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
3 Hb_002370_020 0.1416455082 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
4 Hb_003371_280 0.15552489 - - unnamed protein product [Vitis vinifera]
5 Hb_000014_200 0.1574134952 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
6 Hb_169960_010 0.1583442882 - - -
7 Hb_000034_060 0.158919833 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
8 Hb_000866_400 0.1709668969 - - -
9 Hb_146036_010 0.1737328763 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
10 Hb_003858_080 0.1744632484 - - Germin-like protein 2 [Theobroma cacao]
11 Hb_001144_030 0.1757807025 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
12 Hb_002374_510 0.1772604528 - - Esterase precursor, putative [Ricinus communis]
13 Hb_149507_010 0.1785497525 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
14 Hb_025623_010 0.1788266814 - - -
15 Hb_001143_210 0.1796062877 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
16 Hb_005207_040 0.1797899507 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
17 Hb_009122_010 0.1896827802 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_159809_080 0.1904069118 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_000685_100 0.1907803049 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
20 Hb_184074_010 0.1912159176 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_650 Hb_000300_650 Hb_022973_010 Hb_022973_010 Hb_000300_650--Hb_022973_010 Hb_002370_020 Hb_002370_020 Hb_000300_650--Hb_002370_020 Hb_003371_280 Hb_003371_280 Hb_000300_650--Hb_003371_280 Hb_000014_200 Hb_000014_200 Hb_000300_650--Hb_000014_200 Hb_169960_010 Hb_169960_010 Hb_000300_650--Hb_169960_010 Hb_000034_060 Hb_000034_060 Hb_000300_650--Hb_000034_060 Hb_025623_010 Hb_025623_010 Hb_022973_010--Hb_025623_010 Hb_000866_400 Hb_000866_400 Hb_022973_010--Hb_000866_400 Hb_121624_010 Hb_121624_010 Hb_022973_010--Hb_121624_010 Hb_011519_040 Hb_011519_040 Hb_022973_010--Hb_011519_040 Hb_011501_020 Hb_011501_020 Hb_022973_010--Hb_011501_020 Hb_002370_020--Hb_000866_400 Hb_149507_010 Hb_149507_010 Hb_002370_020--Hb_149507_010 Hb_002370_020--Hb_025623_010 Hb_002370_020--Hb_003371_280 Hb_001269_660 Hb_001269_660 Hb_002370_020--Hb_001269_660 Hb_002374_510 Hb_002374_510 Hb_002370_020--Hb_002374_510 Hb_000620_050 Hb_000620_050 Hb_003371_280--Hb_000620_050 Hb_184074_010 Hb_184074_010 Hb_003371_280--Hb_184074_010 Hb_003371_280--Hb_002374_510 Hb_003371_280--Hb_000866_400 Hb_003371_280--Hb_011519_040 Hb_000014_200--Hb_169960_010 Hb_001144_030 Hb_001144_030 Hb_000014_200--Hb_001144_030 Hb_005207_040 Hb_005207_040 Hb_000014_200--Hb_005207_040 Hb_002559_020 Hb_002559_020 Hb_000014_200--Hb_002559_020 Hb_060783_010 Hb_060783_010 Hb_000014_200--Hb_060783_010 Hb_169960_010--Hb_005207_040 Hb_003688_120 Hb_003688_120 Hb_169960_010--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_169960_010--Hb_014102_010 Hb_169960_010--Hb_001144_030 Hb_169960_010--Hb_002559_020 Hb_031579_010 Hb_031579_010 Hb_000034_060--Hb_031579_010 Hb_146036_010 Hb_146036_010 Hb_000034_060--Hb_146036_010 Hb_000685_100 Hb_000685_100 Hb_000034_060--Hb_000685_100 Hb_000034_060--Hb_002370_020 Hb_000917_030 Hb_000917_030 Hb_000034_060--Hb_000917_030 Hb_000910_030 Hb_000910_030 Hb_000034_060--Hb_000910_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.77877 57.4447 1.79822 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 20.0361 37.7217

CAGE analysis