Hb_002559_020

Information

Type transcription factor
Description TF Family: TUB
Location Contig2559: 21639-22502
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002559_020 0.0 transcription factor TF Family: TUB -
2 Hb_060783_010 0.0343435474 - - Chloride channel protein CLC-c [Populus trichocarpa]
3 Hb_005207_040 0.0489013629 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
4 Hb_036790_050 0.0600722494 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
5 Hb_001144_030 0.0796266047 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
6 Hb_003688_120 0.1106174141 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
7 Hb_014102_010 0.1217063697 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_169960_010 0.1253366238 - - -
9 Hb_000014_200 0.130683762 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
10 Hb_012077_010 0.1491894076 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_184074_010 0.1521699294 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
12 Hb_000959_110 0.1577040536 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
13 Hb_000806_010 0.1586541894 - - PREDICTED: hevamine-A-like [Jatropha curcas]
14 Hb_006755_030 0.1635424804 - - BURP domain-containing protein, putative [Theobroma cacao]
15 Hb_004713_040 0.1740928757 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
16 Hb_022973_010 0.1750327579 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
17 Hb_003371_280 0.1765550737 - - unnamed protein product [Vitis vinifera]
18 Hb_002965_110 0.1818849485 - - hypothetical protein POPTR_0010s15040g [Populus trichocarpa]
19 Hb_001019_030 0.1824905395 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
20 Hb_000649_090 0.1849899799 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_002559_020 Hb_002559_020 Hb_060783_010 Hb_060783_010 Hb_002559_020--Hb_060783_010 Hb_005207_040 Hb_005207_040 Hb_002559_020--Hb_005207_040 Hb_036790_050 Hb_036790_050 Hb_002559_020--Hb_036790_050 Hb_001144_030 Hb_001144_030 Hb_002559_020--Hb_001144_030 Hb_003688_120 Hb_003688_120 Hb_002559_020--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_002559_020--Hb_014102_010 Hb_060783_010--Hb_036790_050 Hb_060783_010--Hb_005207_040 Hb_060783_010--Hb_001144_030 Hb_060783_010--Hb_003688_120 Hb_060783_010--Hb_014102_010 Hb_005207_040--Hb_003688_120 Hb_005207_040--Hb_014102_010 Hb_169960_010 Hb_169960_010 Hb_005207_040--Hb_169960_010 Hb_005207_040--Hb_001144_030 Hb_036790_050--Hb_001144_030 Hb_036790_050--Hb_005207_040 Hb_188281_020 Hb_188281_020 Hb_036790_050--Hb_188281_020 Hb_105885_010 Hb_105885_010 Hb_036790_050--Hb_105885_010 Hb_000014_200 Hb_000014_200 Hb_001144_030--Hb_000014_200 Hb_001144_030--Hb_169960_010 Hb_003688_120--Hb_014102_010 Hb_000649_090 Hb_000649_090 Hb_003688_120--Hb_000649_090 Hb_000806_010 Hb_000806_010 Hb_003688_120--Hb_000806_010 Hb_003688_120--Hb_169960_010 Hb_014102_010--Hb_000806_010 Hb_014102_010--Hb_000649_090 Hb_014102_010--Hb_169960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.473439 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0696477 0.282946

CAGE analysis