Hb_000649_090

Information

Type -
Description -
Location Contig649: 82470-84912
Sequence    

Annotation

kegg
ID mdm:103411907
description nuclear pore complex protein Nup155-like
nr
ID CBI26832.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID M0S233
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0044464
description nuclear pore complex protein nup155

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52483: 82275-82791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_090 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_051410_010 0.0652956942 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
3 Hb_014102_010 0.0713819313 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_003688_120 0.075260934 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
5 Hb_000914_010 0.0761075212 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
6 Hb_000806_010 0.1032764715 - - PREDICTED: hevamine-A-like [Jatropha curcas]
7 Hb_169960_010 0.1325530032 - - -
8 Hb_000946_130 0.1360120532 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
9 Hb_005207_040 0.1378600415 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
10 Hb_012077_010 0.1578434428 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_001248_140 0.1588561227 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_010721_040 0.159192435 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
13 Hb_011476_010 0.1594300794 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_044380_010 0.1628658801 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
15 Hb_022973_010 0.1736044631 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
16 Hb_004530_010 0.1757125859 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
17 Hb_008714_030 0.1765558919 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
18 Hb_002559_020 0.1849899799 transcription factor TF Family: TUB -
19 Hb_006755_030 0.1876718998 - - BURP domain-containing protein, putative [Theobroma cacao]
20 Hb_004274_010 0.190030075 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000649_090 Hb_000649_090 Hb_051410_010 Hb_051410_010 Hb_000649_090--Hb_051410_010 Hb_014102_010 Hb_014102_010 Hb_000649_090--Hb_014102_010 Hb_003688_120 Hb_003688_120 Hb_000649_090--Hb_003688_120 Hb_000914_010 Hb_000914_010 Hb_000649_090--Hb_000914_010 Hb_000806_010 Hb_000806_010 Hb_000649_090--Hb_000806_010 Hb_169960_010 Hb_169960_010 Hb_000649_090--Hb_169960_010 Hb_051410_010--Hb_000914_010 Hb_011476_010 Hb_011476_010 Hb_051410_010--Hb_011476_010 Hb_004274_010 Hb_004274_010 Hb_051410_010--Hb_004274_010 Hb_051410_010--Hb_014102_010 Hb_000946_130 Hb_000946_130 Hb_051410_010--Hb_000946_130 Hb_014102_010--Hb_003688_120 Hb_014102_010--Hb_000806_010 Hb_005207_040 Hb_005207_040 Hb_014102_010--Hb_005207_040 Hb_014102_010--Hb_169960_010 Hb_002559_020 Hb_002559_020 Hb_014102_010--Hb_002559_020 Hb_003688_120--Hb_005207_040 Hb_003688_120--Hb_000806_010 Hb_003688_120--Hb_169960_010 Hb_003688_120--Hb_002559_020 Hb_000914_010--Hb_011476_010 Hb_000914_010--Hb_004274_010 Hb_010721_040 Hb_010721_040 Hb_000914_010--Hb_010721_040 Hb_000029_220 Hb_000029_220 Hb_000914_010--Hb_000029_220 Hb_000806_010--Hb_005207_040 Hb_008714_030 Hb_008714_030 Hb_000806_010--Hb_008714_030 Hb_000806_010--Hb_051410_010 Hb_000014_200 Hb_000014_200 Hb_169960_010--Hb_000014_200 Hb_169960_010--Hb_005207_040 Hb_001144_030 Hb_001144_030 Hb_169960_010--Hb_001144_030 Hb_169960_010--Hb_002559_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.138354 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0455709 0.20346

CAGE analysis