Hb_000914_010

Information

Type -
Description -
Location Contig914: 4566-5665
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00760g
description hypothetical protein
nr
ID XP_006389445.1
description hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
swissprot
ID Q3E9A4
description Probable glycosyltransferase At5g20260 OS=Arabidopsis thaliana GN=At5g20260 PE=3 SV=3
trembl
ID U7E1B4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00760g PE=4 SV=1
Gene Ontology
ID GO:0050508
description probable glycosyltransferase at5g20260

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_010 0.0 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
2 Hb_051410_010 0.0112624217 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
3 Hb_000649_090 0.0761075212 - - unnamed protein product [Vitis vinifera]
4 Hb_011476_010 0.1061810331 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_004274_010 0.1163996955 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
6 Hb_010721_040 0.1316435248 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
7 Hb_000029_220 0.13244291 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
8 Hb_001452_150 0.1327045215 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
9 Hb_000946_130 0.1397681652 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
10 Hb_014102_010 0.1415699186 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_003427_040 0.1450193711 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
12 Hb_009826_010 0.1468323076 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_004530_010 0.1473119308 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
14 Hb_000806_010 0.1479339528 - - PREDICTED: hevamine-A-like [Jatropha curcas]
15 Hb_003688_120 0.149768459 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
16 Hb_003186_050 0.1587865977 - - -
17 Hb_116701_030 0.1611458531 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
18 Hb_001248_140 0.1671734627 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_167457_010 0.1690735218 - - hypothetical protein glysoja_045622, partial [Glycine soja]
20 Hb_094484_010 0.1721263819 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000914_010 Hb_000914_010 Hb_051410_010 Hb_051410_010 Hb_000914_010--Hb_051410_010 Hb_000649_090 Hb_000649_090 Hb_000914_010--Hb_000649_090 Hb_011476_010 Hb_011476_010 Hb_000914_010--Hb_011476_010 Hb_004274_010 Hb_004274_010 Hb_000914_010--Hb_004274_010 Hb_010721_040 Hb_010721_040 Hb_000914_010--Hb_010721_040 Hb_000029_220 Hb_000029_220 Hb_000914_010--Hb_000029_220 Hb_051410_010--Hb_000649_090 Hb_051410_010--Hb_011476_010 Hb_051410_010--Hb_004274_010 Hb_014102_010 Hb_014102_010 Hb_051410_010--Hb_014102_010 Hb_000946_130 Hb_000946_130 Hb_051410_010--Hb_000946_130 Hb_000649_090--Hb_014102_010 Hb_003688_120 Hb_003688_120 Hb_000649_090--Hb_003688_120 Hb_000806_010 Hb_000806_010 Hb_000649_090--Hb_000806_010 Hb_169960_010 Hb_169960_010 Hb_000649_090--Hb_169960_010 Hb_003186_050 Hb_003186_050 Hb_011476_010--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_011476_010--Hb_167457_010 Hb_011476_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_011476_010--Hb_001452_150 Hb_003427_040 Hb_003427_040 Hb_011476_010--Hb_003427_040 Hb_004274_010--Hb_001452_150 Hb_004274_010--Hb_003427_040 Hb_009826_010 Hb_009826_010 Hb_004274_010--Hb_009826_010 Hb_004274_010--Hb_000029_220 Hb_024248_010 Hb_024248_010 Hb_004274_010--Hb_024248_010 Hb_102761_010 Hb_102761_010 Hb_010721_040--Hb_102761_010 Hb_094484_010 Hb_094484_010 Hb_010721_040--Hb_094484_010 Hb_004530_010 Hb_004530_010 Hb_010721_040--Hb_004530_010 Hb_000343_090 Hb_000343_090 Hb_010721_040--Hb_000343_090 Hb_025161_030 Hb_025161_030 Hb_010721_040--Hb_025161_030 Hb_008714_030 Hb_008714_030 Hb_010721_040--Hb_008714_030 Hb_027969_010 Hb_027969_010 Hb_000029_220--Hb_027969_010 Hb_000029_220--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_000029_220--Hb_005676_020 Hb_000029_220--Hb_001452_150 Hb_000029_220--Hb_009826_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0734596 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0316151 0.160997

CAGE analysis