Hb_094484_010

Information

Type -
Description -
Location Contig94484: 90-7519
Sequence    

Annotation

kegg
ID rcu:RCOM_0574920
description kinase, putative (EC:2.7.10.1)
nr
ID XP_002529764.1
description kinase, putative [Ricinus communis]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID B9SUU5
description Kinase, putative OS=Ricinus communis GN=RCOM_0574920 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094484_010 0.0 - - kinase, putative [Ricinus communis]
2 Hb_010721_040 0.1041757747 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
3 Hb_102761_010 0.1175265109 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
4 Hb_025161_030 0.1199454009 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_000415_080 0.1229033784 - - -
6 Hb_004274_010 0.1338702217 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
7 Hb_001452_150 0.1353751824 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
8 Hb_003427_040 0.1380180176 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_009826_010 0.1385269014 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_040245_010 0.1422731892 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
11 Hb_004530_010 0.1498315539 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
12 Hb_003462_170 0.1518810579 - - unnamed protein product [Vitis vinifera]
13 Hb_151870_010 0.1528535729 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
14 Hb_004896_030 0.1536078669 - - hypothetical protein VITISV_007475 [Vitis vinifera]
15 Hb_097783_030 0.1545908247 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
16 Hb_003073_030 0.1563652171 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000029_220 0.1566986955 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
18 Hb_062192_050 0.1576254611 - - -
19 Hb_011476_010 0.15911032 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_000627_110 0.1595783209 - - cellulose synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_094484_010 Hb_094484_010 Hb_010721_040 Hb_010721_040 Hb_094484_010--Hb_010721_040 Hb_102761_010 Hb_102761_010 Hb_094484_010--Hb_102761_010 Hb_025161_030 Hb_025161_030 Hb_094484_010--Hb_025161_030 Hb_000415_080 Hb_000415_080 Hb_094484_010--Hb_000415_080 Hb_004274_010 Hb_004274_010 Hb_094484_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_094484_010--Hb_001452_150 Hb_010721_040--Hb_102761_010 Hb_004530_010 Hb_004530_010 Hb_010721_040--Hb_004530_010 Hb_000343_090 Hb_000343_090 Hb_010721_040--Hb_000343_090 Hb_010721_040--Hb_025161_030 Hb_008714_030 Hb_008714_030 Hb_010721_040--Hb_008714_030 Hb_102761_010--Hb_004530_010 Hb_014510_030 Hb_014510_030 Hb_102761_010--Hb_014510_030 Hb_102761_010--Hb_000415_080 Hb_004896_030 Hb_004896_030 Hb_102761_010--Hb_004896_030 Hb_000627_110 Hb_000627_110 Hb_102761_010--Hb_000627_110 Hb_128750_010 Hb_128750_010 Hb_025161_030--Hb_128750_010 Hb_025161_030--Hb_102761_010 Hb_025161_030--Hb_004530_010 Hb_025161_030--Hb_000415_080 Hb_040245_010 Hb_040245_010 Hb_000415_080--Hb_040245_010 Hb_003073_030 Hb_003073_030 Hb_000415_080--Hb_003073_030 Hb_000415_080--Hb_000627_110 Hb_000415_080--Hb_014510_030 Hb_000199_090 Hb_000199_090 Hb_000415_080--Hb_000199_090 Hb_004274_010--Hb_001452_150 Hb_003427_040 Hb_003427_040 Hb_004274_010--Hb_003427_040 Hb_009826_010 Hb_009826_010 Hb_004274_010--Hb_009826_010 Hb_011476_010 Hb_011476_010 Hb_004274_010--Hb_011476_010 Hb_000029_220 Hb_000029_220 Hb_004274_010--Hb_000029_220 Hb_024248_010 Hb_024248_010 Hb_004274_010--Hb_024248_010 Hb_001452_150--Hb_003427_040 Hb_001452_150--Hb_009826_010 Hb_001452_150--Hb_024248_010 Hb_001452_150--Hb_000029_220 Hb_001452_150--Hb_011476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00987129 0.045812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0359612 0.18923

CAGE analysis