Hb_009826_010

Information

Type -
Description -
Location Contig9826: 8960-32856
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009826_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_003427_040 0.0047480769 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
3 Hb_001452_150 0.0149164603 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
4 Hb_004274_010 0.0336513874 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
5 Hb_024248_010 0.0720596566 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
6 Hb_000029_220 0.0903064371 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
7 Hb_001401_030 0.1073119835 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
8 Hb_011476_010 0.111672554 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
9 Hb_000907_050 0.117924078 - - -
10 Hb_005676_020 0.1240991521 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
11 Hb_003186_050 0.1307768998 - - -
12 Hb_167457_010 0.1356482005 - - hypothetical protein glysoja_045622, partial [Glycine soja]
13 Hb_094484_010 0.1385269014 - - kinase, putative [Ricinus communis]
14 Hb_062192_050 0.1449197635 - - -
15 Hb_000914_010 0.1468323076 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
16 Hb_027969_010 0.1490930121 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
17 Hb_010964_030 0.1555579303 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
18 Hb_051410_010 0.1570634989 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
19 Hb_003772_010 0.1702324396 - - polyprotein [Oryza australiensis]
20 Hb_000811_090 0.1717412322 - - hypothetical protein VITISV_043745 [Vitis vinifera]

Gene co-expression network

sample Hb_009826_010 Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_009826_010--Hb_003427_040 Hb_001452_150 Hb_001452_150 Hb_009826_010--Hb_001452_150 Hb_004274_010 Hb_004274_010 Hb_009826_010--Hb_004274_010 Hb_024248_010 Hb_024248_010 Hb_009826_010--Hb_024248_010 Hb_000029_220 Hb_000029_220 Hb_009826_010--Hb_000029_220 Hb_001401_030 Hb_001401_030 Hb_009826_010--Hb_001401_030 Hb_003427_040--Hb_001452_150 Hb_003427_040--Hb_004274_010 Hb_003427_040--Hb_024248_010 Hb_003427_040--Hb_000029_220 Hb_011476_010 Hb_011476_010 Hb_003427_040--Hb_011476_010 Hb_001452_150--Hb_004274_010 Hb_001452_150--Hb_024248_010 Hb_001452_150--Hb_000029_220 Hb_001452_150--Hb_011476_010 Hb_004274_010--Hb_011476_010 Hb_004274_010--Hb_000029_220 Hb_004274_010--Hb_024248_010 Hb_024248_010--Hb_001401_030 Hb_005676_020 Hb_005676_020 Hb_024248_010--Hb_005676_020 Hb_024248_010--Hb_000029_220 Hb_027969_010 Hb_027969_010 Hb_000029_220--Hb_027969_010 Hb_000029_220--Hb_005676_020 Hb_001401_030--Hb_005676_020 Hb_000907_050 Hb_000907_050 Hb_001401_030--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_001401_030--Hb_003772_010 Hb_062192_050 Hb_062192_050 Hb_001401_030--Hb_062192_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00205106 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00199629 0.0108763

CAGE analysis