Hb_005676_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig5676: 25583-26602
Sequence    

Annotation

kegg
ID rcu:RCOM_1314900
description hypothetical protein
nr
ID XP_002518956.1
description hypothetical protein RCOM_1314900 [Ricinus communis]
swissprot
ID Q6J9S1
description Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1
trembl
ID B9RYY7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1314900 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2 erf domain-containing transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005676_020 0.0 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
2 Hb_024248_010 0.0540864567 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
3 Hb_001401_030 0.0572155546 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
4 Hb_027969_010 0.0747484334 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
5 Hb_000029_220 0.0817009355 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
6 Hb_000907_050 0.1159027162 - - -
7 Hb_062192_050 0.118074634 - - -
8 Hb_009826_010 0.1240991521 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_003772_010 0.1280132725 - - polyprotein [Oryza australiensis]
10 Hb_003427_040 0.1286904823 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_001452_150 0.131840579 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
12 Hb_004113_030 0.1358562649 - - -
13 Hb_004274_010 0.1455719794 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
14 Hb_000844_060 0.1573723503 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
15 Hb_057716_010 0.1649450666 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_184398_010 0.166487393 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
17 Hb_001681_010 0.1667417333 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
18 Hb_004466_080 0.1692637598 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
19 Hb_000010_230 0.1708963078 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
20 Hb_002874_250 0.1713081552 - - -

Gene co-expression network

sample Hb_005676_020 Hb_005676_020 Hb_024248_010 Hb_024248_010 Hb_005676_020--Hb_024248_010 Hb_001401_030 Hb_001401_030 Hb_005676_020--Hb_001401_030 Hb_027969_010 Hb_027969_010 Hb_005676_020--Hb_027969_010 Hb_000029_220 Hb_000029_220 Hb_005676_020--Hb_000029_220 Hb_000907_050 Hb_000907_050 Hb_005676_020--Hb_000907_050 Hb_062192_050 Hb_062192_050 Hb_005676_020--Hb_062192_050 Hb_024248_010--Hb_001401_030 Hb_024248_010--Hb_000029_220 Hb_009826_010 Hb_009826_010 Hb_024248_010--Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_024248_010--Hb_003427_040 Hb_001452_150 Hb_001452_150 Hb_024248_010--Hb_001452_150 Hb_001401_030--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_001401_030--Hb_003772_010 Hb_001401_030--Hb_062192_050 Hb_001401_030--Hb_009826_010 Hb_027969_010--Hb_000029_220 Hb_027969_010--Hb_024248_010 Hb_004113_030 Hb_004113_030 Hb_027969_010--Hb_004113_030 Hb_116701_030 Hb_116701_030 Hb_027969_010--Hb_116701_030 Hb_027969_010--Hb_001401_030 Hb_000029_220--Hb_001452_150 Hb_000029_220--Hb_009826_010 Hb_004274_010 Hb_004274_010 Hb_000029_220--Hb_004274_010 Hb_000907_050--Hb_003772_010 Hb_000907_050--Hb_024248_010 Hb_000907_050--Hb_062192_050 Hb_030987_010 Hb_030987_010 Hb_000907_050--Hb_030987_010 Hb_010964_030 Hb_010964_030 Hb_000907_050--Hb_010964_030 Hb_057716_010 Hb_057716_010 Hb_062192_050--Hb_057716_010 Hb_062192_050--Hb_003772_010 Hb_062192_050--Hb_024248_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0339376 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0156315 0.239005

CAGE analysis