Hb_003772_010

Information

Type -
Description -
Location Contig3772: 1009-3415
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003772_010 0.0 - - polyprotein [Oryza australiensis]
2 Hb_000907_050 0.0576181992 - - -
3 Hb_001401_030 0.0814176203 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
4 Hb_062192_050 0.1049058613 - - -
5 Hb_030987_010 0.1200976306 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_024248_010 0.1258671128 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
7 Hb_005676_020 0.1280132725 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
8 Hb_010964_030 0.1322917836 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
9 Hb_001782_090 0.1448230211 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
10 Hb_000905_010 0.1448244286 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
11 Hb_000777_010 0.1448258896 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
12 Hb_026317_020 0.1448291275 - - hypothetical protein VITISV_035911 [Vitis vinifera]
13 Hb_006599_040 0.1448298083 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_004145_030 0.1448304317 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_174010_030 0.1448325152 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
16 Hb_002396_010 0.1448366857 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
17 Hb_001348_240 0.1448389446 - - Putative polyprotein, identical [Solanum demissum]
18 Hb_001307_230 0.1448457395 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
19 Hb_001172_110 0.1448895506 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
20 Hb_002375_100 0.144918735 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]

Gene co-expression network

sample Hb_003772_010 Hb_003772_010 Hb_000907_050 Hb_000907_050 Hb_003772_010--Hb_000907_050 Hb_001401_030 Hb_001401_030 Hb_003772_010--Hb_001401_030 Hb_062192_050 Hb_062192_050 Hb_003772_010--Hb_062192_050 Hb_030987_010 Hb_030987_010 Hb_003772_010--Hb_030987_010 Hb_024248_010 Hb_024248_010 Hb_003772_010--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_003772_010--Hb_005676_020 Hb_000907_050--Hb_001401_030 Hb_000907_050--Hb_024248_010 Hb_000907_050--Hb_062192_050 Hb_000907_050--Hb_030987_010 Hb_010964_030 Hb_010964_030 Hb_000907_050--Hb_010964_030 Hb_001401_030--Hb_024248_010 Hb_001401_030--Hb_005676_020 Hb_001401_030--Hb_062192_050 Hb_009826_010 Hb_009826_010 Hb_001401_030--Hb_009826_010 Hb_057716_010 Hb_057716_010 Hb_062192_050--Hb_057716_010 Hb_062192_050--Hb_024248_010 Hb_062192_050--Hb_005676_020 Hb_030987_010--Hb_010964_030 Hb_098361_010 Hb_098361_010 Hb_030987_010--Hb_098361_010 Hb_000581_070 Hb_000581_070 Hb_030987_010--Hb_000581_070 Hb_007668_030 Hb_007668_030 Hb_030987_010--Hb_007668_030 Hb_024248_010--Hb_005676_020 Hb_000029_220 Hb_000029_220 Hb_024248_010--Hb_000029_220 Hb_024248_010--Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_024248_010--Hb_003427_040 Hb_001452_150 Hb_001452_150 Hb_024248_010--Hb_001452_150 Hb_027969_010 Hb_027969_010 Hb_005676_020--Hb_027969_010 Hb_005676_020--Hb_000029_220 Hb_005676_020--Hb_000907_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00712108 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0142168 0.151008

CAGE analysis