Hb_007668_030

Information

Type -
Description -
Location Contig7668: 44064-44591
Sequence    

Annotation

kegg
ID mus:103977433
description cold shock domain-containing protein 3-like
nr
ID XP_009391215.1
description PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
swissprot
ID -
description -
trembl
ID U5G7X6
description Cold-shock DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0007s09635g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007668_030 0.0 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
2 Hb_000581_070 0.0005325493 - - -
3 Hb_098361_010 0.0009913494 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
4 Hb_007120_110 0.003255275 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
5 Hb_001988_040 0.0045250484 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
6 Hb_060300_010 0.0051162539 - - hypothetical protein F383_16817 [Gossypium arboreum]
7 Hb_001461_030 0.0053483796 - - -
8 Hb_024415_010 0.0058621034 - - -
9 Hb_004048_040 0.0070805654 - - -
10 Hb_000573_080 0.0074264827 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
11 Hb_011980_030 0.0075588681 - - conserved hypothetical protein [Ricinus communis]
12 Hb_047399_010 0.0082687397 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
13 Hb_100500_010 0.0090494015 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
14 Hb_000832_260 0.0092883175 - - Protein gar2, putative [Ricinus communis]
15 Hb_109050_010 0.0092883175 - - -
16 Hb_001221_420 0.0119484051 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
17 Hb_047387_010 0.0120402498 - - -
18 Hb_001821_040 0.0122054224 - - -
19 Hb_056867_010 0.0130676399 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_118840_040 0.0131480139 - - -

Gene co-expression network

sample Hb_007668_030 Hb_007668_030 Hb_000581_070 Hb_000581_070 Hb_007668_030--Hb_000581_070 Hb_098361_010 Hb_098361_010 Hb_007668_030--Hb_098361_010 Hb_007120_110 Hb_007120_110 Hb_007668_030--Hb_007120_110 Hb_001988_040 Hb_001988_040 Hb_007668_030--Hb_001988_040 Hb_060300_010 Hb_060300_010 Hb_007668_030--Hb_060300_010 Hb_001461_030 Hb_001461_030 Hb_007668_030--Hb_001461_030 Hb_000581_070--Hb_098361_010 Hb_000581_070--Hb_007120_110 Hb_000581_070--Hb_001988_040 Hb_000581_070--Hb_060300_010 Hb_000581_070--Hb_001461_030 Hb_098361_010--Hb_001988_040 Hb_098361_010--Hb_060300_010 Hb_098361_010--Hb_007120_110 Hb_098361_010--Hb_001461_030 Hb_007120_110--Hb_001461_030 Hb_024415_010 Hb_024415_010 Hb_007120_110--Hb_024415_010 Hb_004048_040 Hb_004048_040 Hb_007120_110--Hb_004048_040 Hb_000573_080 Hb_000573_080 Hb_007120_110--Hb_000573_080 Hb_001988_040--Hb_060300_010 Hb_011980_030 Hb_011980_030 Hb_001988_040--Hb_011980_030 Hb_000832_260 Hb_000832_260 Hb_001988_040--Hb_000832_260 Hb_060300_010--Hb_011980_030 Hb_060300_010--Hb_000832_260 Hb_109050_010 Hb_109050_010 Hb_060300_010--Hb_109050_010 Hb_001461_030--Hb_024415_010 Hb_001461_030--Hb_004048_040 Hb_001461_030--Hb_000573_080 Hb_047399_010 Hb_047399_010 Hb_001461_030--Hb_047399_010 Hb_100500_010 Hb_100500_010 Hb_001461_030--Hb_100500_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0799062 0.365238

CAGE analysis