Hb_004048_040

Information

Type -
Description -
Location Contig4048: 15249-31940
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0000724
description anaphase-promoting complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_040 0.0 - - -
2 Hb_000573_080 0.0003459328 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
3 Hb_047399_010 0.0011882338 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
4 Hb_024415_010 0.001218505 - - -
5 Hb_001461_030 0.0017322415 - - -
6 Hb_100500_010 0.001968944 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
7 Hb_007120_110 0.003825365 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_001221_420 0.004868194 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
9 Hb_047387_010 0.0049600482 - - -
10 Hb_056867_010 0.0059875521 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
11 Hb_118840_040 0.0060679355 - - -
12 Hb_135866_010 0.0062266801 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
13 Hb_007668_030 0.0070805654 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
14 Hb_007426_020 0.0075875985 - - putative polyprotein [Oryza sativa Japonica Group]
15 Hb_000581_070 0.0076130906 - - -
16 Hb_098361_010 0.0080718672 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
17 Hb_005976_100 0.0085854933 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
18 Hb_000692_050 0.0086979452 - - -
19 Hb_000552_050 0.00973322 - - -
20 Hb_005411_010 0.010453576 - - -

Gene co-expression network

sample Hb_004048_040 Hb_004048_040 Hb_000573_080 Hb_000573_080 Hb_004048_040--Hb_000573_080 Hb_047399_010 Hb_047399_010 Hb_004048_040--Hb_047399_010 Hb_024415_010 Hb_024415_010 Hb_004048_040--Hb_024415_010 Hb_001461_030 Hb_001461_030 Hb_004048_040--Hb_001461_030 Hb_100500_010 Hb_100500_010 Hb_004048_040--Hb_100500_010 Hb_007120_110 Hb_007120_110 Hb_004048_040--Hb_007120_110 Hb_000573_080--Hb_047399_010 Hb_000573_080--Hb_024415_010 Hb_000573_080--Hb_100500_010 Hb_000573_080--Hb_001461_030 Hb_000573_080--Hb_007120_110 Hb_047399_010--Hb_100500_010 Hb_047399_010--Hb_024415_010 Hb_047399_010--Hb_001461_030 Hb_001221_420 Hb_001221_420 Hb_047399_010--Hb_001221_420 Hb_024415_010--Hb_001461_030 Hb_024415_010--Hb_007120_110 Hb_024415_010--Hb_100500_010 Hb_001461_030--Hb_007120_110 Hb_001461_030--Hb_100500_010 Hb_100500_010--Hb_001221_420 Hb_047387_010 Hb_047387_010 Hb_100500_010--Hb_047387_010 Hb_007668_030 Hb_007668_030 Hb_007120_110--Hb_007668_030 Hb_000581_070 Hb_000581_070 Hb_007120_110--Hb_000581_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.029853 0.142556

CAGE analysis