Hb_047387_010

Information

Type -
Description -
Location Contig47387: 481-2537
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047387_010 0.0 - - -
2 Hb_001221_420 9.18562e-05 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
3 Hb_056867_010 0.0010275307 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
4 Hb_118840_040 0.0011079167 - - -
5 Hb_135866_010 0.0012666663 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
6 Hb_007426_020 0.0026276378 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_100500_010 0.0029911298 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
8 Hb_005976_100 0.003625582 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
9 Hb_000692_050 0.0037380399 - - -
10 Hb_047399_010 0.0037718339 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
11 Hb_000573_080 0.0046141223 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
12 Hb_000552_050 0.0047733765 - - -
13 Hb_004048_040 0.0049600482 - - -
14 Hb_005411_010 0.0054937812 - - -
15 Hb_011675_010 0.0057297557 - - -
16 Hb_001385_030 0.0060858623 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
17 Hb_015036_010 0.006085979 - - -
18 Hb_024415_010 0.0061785208 - - -
19 Hb_160953_010 0.0066675295 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
20 Hb_001461_030 0.0066922397 - - -

Gene co-expression network

sample Hb_047387_010 Hb_047387_010 Hb_001221_420 Hb_001221_420 Hb_047387_010--Hb_001221_420 Hb_056867_010 Hb_056867_010 Hb_047387_010--Hb_056867_010 Hb_118840_040 Hb_118840_040 Hb_047387_010--Hb_118840_040 Hb_135866_010 Hb_135866_010 Hb_047387_010--Hb_135866_010 Hb_007426_020 Hb_007426_020 Hb_047387_010--Hb_007426_020 Hb_100500_010 Hb_100500_010 Hb_047387_010--Hb_100500_010 Hb_001221_420--Hb_056867_010 Hb_001221_420--Hb_118840_040 Hb_001221_420--Hb_135866_010 Hb_001221_420--Hb_007426_020 Hb_001221_420--Hb_100500_010 Hb_056867_010--Hb_118840_040 Hb_056867_010--Hb_135866_010 Hb_056867_010--Hb_007426_020 Hb_005976_100 Hb_005976_100 Hb_056867_010--Hb_005976_100 Hb_118840_040--Hb_135866_010 Hb_118840_040--Hb_007426_020 Hb_118840_040--Hb_005976_100 Hb_135866_010--Hb_007426_020 Hb_135866_010--Hb_005976_100 Hb_007426_020--Hb_005976_100 Hb_000692_050 Hb_000692_050 Hb_007426_020--Hb_000692_050 Hb_000552_050 Hb_000552_050 Hb_007426_020--Hb_000552_050 Hb_047399_010 Hb_047399_010 Hb_100500_010--Hb_047399_010 Hb_000573_080 Hb_000573_080 Hb_100500_010--Hb_000573_080 Hb_004048_040 Hb_004048_040 Hb_100500_010--Hb_004048_040 Hb_024415_010 Hb_024415_010 Hb_100500_010--Hb_024415_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0688858 0.339314

CAGE analysis