Hb_000573_080

Information

Type -
Description -
Location Contig573: 78537-80056
Sequence    

Annotation

kegg
ID cam:101510272
description uncharacterized LOC101510272
nr
ID XP_004499524.1
description PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
swissprot
ID -
description -
trembl
ID A0A0A9IZD4
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000573_080 0.0 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
2 Hb_004048_040 0.0003459328 - - -
3 Hb_047399_010 0.0008423013 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
4 Hb_024415_010 0.0015644372 - - -
5 Hb_100500_010 0.0016230122 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
6 Hb_001461_030 0.0020781732 - - -
7 Hb_007120_110 0.0041712931 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_001221_420 0.0045222678 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
9 Hb_047387_010 0.0046141223 - - -
10 Hb_056867_010 0.0056416295 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
11 Hb_118840_040 0.0057220132 - - -
12 Hb_135866_010 0.0058807583 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
13 Hb_007426_020 0.0072416824 - - putative polyprotein [Oryza sativa Japonica Group]
14 Hb_007668_030 0.0074264827 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
15 Hb_000581_070 0.0079590055 - - -
16 Hb_005976_100 0.008239582 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
17 Hb_000692_050 0.0083520345 - - -
18 Hb_098361_010 0.00841778 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
19 Hb_000552_050 0.009387315 - - -
20 Hb_005411_010 0.0101076754 - - -

Gene co-expression network

sample Hb_000573_080 Hb_000573_080 Hb_004048_040 Hb_004048_040 Hb_000573_080--Hb_004048_040 Hb_047399_010 Hb_047399_010 Hb_000573_080--Hb_047399_010 Hb_024415_010 Hb_024415_010 Hb_000573_080--Hb_024415_010 Hb_100500_010 Hb_100500_010 Hb_000573_080--Hb_100500_010 Hb_001461_030 Hb_001461_030 Hb_000573_080--Hb_001461_030 Hb_007120_110 Hb_007120_110 Hb_000573_080--Hb_007120_110 Hb_004048_040--Hb_047399_010 Hb_004048_040--Hb_024415_010 Hb_004048_040--Hb_001461_030 Hb_004048_040--Hb_100500_010 Hb_004048_040--Hb_007120_110 Hb_047399_010--Hb_100500_010 Hb_047399_010--Hb_024415_010 Hb_047399_010--Hb_001461_030 Hb_001221_420 Hb_001221_420 Hb_047399_010--Hb_001221_420 Hb_024415_010--Hb_001461_030 Hb_024415_010--Hb_007120_110 Hb_024415_010--Hb_100500_010 Hb_100500_010--Hb_001221_420 Hb_047387_010 Hb_047387_010 Hb_100500_010--Hb_047387_010 Hb_001461_030--Hb_007120_110 Hb_001461_030--Hb_100500_010 Hb_007668_030 Hb_007668_030 Hb_007120_110--Hb_007668_030 Hb_000581_070 Hb_000581_070 Hb_007120_110--Hb_000581_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0293673 0.140539

CAGE analysis