Hb_001221_420

Information

Type -
Description -
Location Contig1221: 276712-279905
Sequence    

Annotation

kegg
ID tcc:TCM_032186
description hypothetical protein
nr
ID XP_007022061.1
description Uncharacterized protein TCM_032186 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F981
description Uncharacterized protein OS=Theobroma cacao GN=TCM_032186 PE=4 SV=1
Gene Ontology
ID GO:0003676
description esterase lipase thioesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06752: 278830-279090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_420 0.0 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
2 Hb_047387_010 9.18562e-05 - - -
3 Hb_056867_010 0.0011193869 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
4 Hb_118840_040 0.0011997728 - - -
5 Hb_135866_010 0.0013585224 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
6 Hb_007426_020 0.0027194934 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_100500_010 0.0028992743 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
8 Hb_047399_010 0.0036799788 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
9 Hb_005976_100 0.0037174371 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
10 Hb_000692_050 0.003829895 - - -
11 Hb_000573_080 0.0045222678 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
12 Hb_000552_050 0.0048652308 - - -
13 Hb_004048_040 0.004868194 - - -
14 Hb_005411_010 0.0055856348 - - -
15 Hb_011675_010 0.0058216091 - - -
16 Hb_024415_010 0.0060866676 - - -
17 Hb_001385_030 0.0061777154 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
18 Hb_015036_010 0.0061778321 - - -
19 Hb_001461_030 0.0066003871 - - -
20 Hb_160953_010 0.006759382 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001221_420 Hb_001221_420 Hb_047387_010 Hb_047387_010 Hb_001221_420--Hb_047387_010 Hb_056867_010 Hb_056867_010 Hb_001221_420--Hb_056867_010 Hb_118840_040 Hb_118840_040 Hb_001221_420--Hb_118840_040 Hb_135866_010 Hb_135866_010 Hb_001221_420--Hb_135866_010 Hb_007426_020 Hb_007426_020 Hb_001221_420--Hb_007426_020 Hb_100500_010 Hb_100500_010 Hb_001221_420--Hb_100500_010 Hb_047387_010--Hb_056867_010 Hb_047387_010--Hb_118840_040 Hb_047387_010--Hb_135866_010 Hb_047387_010--Hb_007426_020 Hb_047387_010--Hb_100500_010 Hb_056867_010--Hb_118840_040 Hb_056867_010--Hb_135866_010 Hb_056867_010--Hb_007426_020 Hb_005976_100 Hb_005976_100 Hb_056867_010--Hb_005976_100 Hb_118840_040--Hb_135866_010 Hb_118840_040--Hb_007426_020 Hb_118840_040--Hb_005976_100 Hb_135866_010--Hb_007426_020 Hb_135866_010--Hb_005976_100 Hb_007426_020--Hb_005976_100 Hb_000692_050 Hb_000692_050 Hb_007426_020--Hb_000692_050 Hb_000552_050 Hb_000552_050 Hb_007426_020--Hb_000552_050 Hb_047399_010 Hb_047399_010 Hb_100500_010--Hb_047399_010 Hb_000573_080 Hb_000573_080 Hb_100500_010--Hb_000573_080 Hb_004048_040 Hb_004048_040 Hb_100500_010--Hb_004048_040 Hb_024415_010 Hb_024415_010 Hb_100500_010--Hb_024415_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0230878 0.113659

CAGE analysis