Hb_100500_010

Information

Type -
Description -
Location Contig100500: 33-787
Sequence    

Annotation

kegg
ID cit:102609326
description uncharacterized LOC102609326
nr
ID XP_012466995.1
description PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100500_010 0.0 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
2 Hb_047399_010 0.0007807118 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
3 Hb_000573_080 0.0016230122 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
4 Hb_004048_040 0.001968944 - - -
5 Hb_001221_420 0.0028992743 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
6 Hb_047387_010 0.0029911298 - - -
7 Hb_024415_010 0.0031874424 - - -
8 Hb_001461_030 0.0037011746 - - -
9 Hb_056867_010 0.0040186496 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
10 Hb_118840_040 0.0040990344 - - -
11 Hb_135866_010 0.0042577818 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
12 Hb_007426_020 0.0056187283 - - putative polyprotein [Oryza sativa Japonica Group]
13 Hb_007120_110 0.0057942715 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
14 Hb_005976_100 0.0066166479 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
15 Hb_000692_050 0.0067291027 - - -
16 Hb_000552_050 0.0077644074 - - -
17 Hb_005411_010 0.0084847864 - - -
18 Hb_011675_010 0.0087207519 - - -
19 Hb_007668_030 0.0090494015 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
20 Hb_001385_030 0.0090768443 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]

Gene co-expression network

sample Hb_100500_010 Hb_100500_010 Hb_047399_010 Hb_047399_010 Hb_100500_010--Hb_047399_010 Hb_000573_080 Hb_000573_080 Hb_100500_010--Hb_000573_080 Hb_004048_040 Hb_004048_040 Hb_100500_010--Hb_004048_040 Hb_001221_420 Hb_001221_420 Hb_100500_010--Hb_001221_420 Hb_047387_010 Hb_047387_010 Hb_100500_010--Hb_047387_010 Hb_024415_010 Hb_024415_010 Hb_100500_010--Hb_024415_010 Hb_047399_010--Hb_000573_080 Hb_047399_010--Hb_004048_040 Hb_047399_010--Hb_024415_010 Hb_001461_030 Hb_001461_030 Hb_047399_010--Hb_001461_030 Hb_047399_010--Hb_001221_420 Hb_000573_080--Hb_004048_040 Hb_000573_080--Hb_024415_010 Hb_000573_080--Hb_001461_030 Hb_007120_110 Hb_007120_110 Hb_000573_080--Hb_007120_110 Hb_004048_040--Hb_024415_010 Hb_004048_040--Hb_001461_030 Hb_004048_040--Hb_007120_110 Hb_001221_420--Hb_047387_010 Hb_056867_010 Hb_056867_010 Hb_001221_420--Hb_056867_010 Hb_118840_040 Hb_118840_040 Hb_001221_420--Hb_118840_040 Hb_135866_010 Hb_135866_010 Hb_001221_420--Hb_135866_010 Hb_007426_020 Hb_007426_020 Hb_001221_420--Hb_007426_020 Hb_047387_010--Hb_056867_010 Hb_047387_010--Hb_118840_040 Hb_047387_010--Hb_135866_010 Hb_047387_010--Hb_007426_020 Hb_024415_010--Hb_001461_030 Hb_024415_010--Hb_007120_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0270995 0.131006

CAGE analysis