Hb_007120_110

Information

Type -
Description -
Location Contig7120: 111203-118012
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007120_110 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_001461_030 0.0020931354 - - -
3 Hb_024415_010 0.0026068704 - - -
4 Hb_007668_030 0.003255275 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
5 Hb_000581_070 0.0037878188 - - -
6 Hb_004048_040 0.003825365 - - -
7 Hb_000573_080 0.0041712931 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
8 Hb_098361_010 0.004246613 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
9 Hb_047399_010 0.0050135792 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
10 Hb_100500_010 0.0057942715 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
11 Hb_001988_040 0.0077802285 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
12 Hb_060300_010 0.0083714135 - - hypothetical protein F383_16817 [Gossypium arboreum]
13 Hb_001221_420 0.0086934188 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
14 Hb_047387_010 0.0087852689 - - -
15 Hb_056867_010 0.0098127221 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
16 Hb_118840_040 0.0098931013 - - -
17 Hb_135866_010 0.0100518373 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
18 Hb_011980_030 0.0108139239 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007426_020 0.0114126753 - - putative polyprotein [Oryza sativa Japonica Group]
20 Hb_005976_100 0.0124105031 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]

Gene co-expression network

sample Hb_007120_110 Hb_007120_110 Hb_001461_030 Hb_001461_030 Hb_007120_110--Hb_001461_030 Hb_024415_010 Hb_024415_010 Hb_007120_110--Hb_024415_010 Hb_007668_030 Hb_007668_030 Hb_007120_110--Hb_007668_030 Hb_000581_070 Hb_000581_070 Hb_007120_110--Hb_000581_070 Hb_004048_040 Hb_004048_040 Hb_007120_110--Hb_004048_040 Hb_000573_080 Hb_000573_080 Hb_007120_110--Hb_000573_080 Hb_001461_030--Hb_024415_010 Hb_001461_030--Hb_004048_040 Hb_001461_030--Hb_000573_080 Hb_047399_010 Hb_047399_010 Hb_001461_030--Hb_047399_010 Hb_100500_010 Hb_100500_010 Hb_001461_030--Hb_100500_010 Hb_024415_010--Hb_004048_040 Hb_024415_010--Hb_000573_080 Hb_024415_010--Hb_047399_010 Hb_024415_010--Hb_100500_010 Hb_007668_030--Hb_000581_070 Hb_098361_010 Hb_098361_010 Hb_007668_030--Hb_098361_010 Hb_001988_040 Hb_001988_040 Hb_007668_030--Hb_001988_040 Hb_060300_010 Hb_060300_010 Hb_007668_030--Hb_060300_010 Hb_007668_030--Hb_001461_030 Hb_000581_070--Hb_098361_010 Hb_000581_070--Hb_001988_040 Hb_000581_070--Hb_060300_010 Hb_000581_070--Hb_001461_030 Hb_004048_040--Hb_000573_080 Hb_004048_040--Hb_047399_010 Hb_004048_040--Hb_100500_010 Hb_000573_080--Hb_047399_010 Hb_000573_080--Hb_100500_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0352697 0.164475

CAGE analysis