Hb_001988_040

Information

Type -
Description -
Location Contig1988: 62602-63084
Sequence    

Annotation

kegg
ID cic:CICLE_v10006597mg
description hypothetical protein
nr
ID XP_006421689.1
description hypothetical protein CICLE_v10006597mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4U6Q5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006597mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10006597mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001988_040 0.0 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
2 Hb_060300_010 0.0005912167 - - hypothetical protein F383_16817 [Gossypium arboreum]
3 Hb_011980_030 0.0030339039 - - conserved hypothetical protein [Ricinus communis]
4 Hb_098361_010 0.003533712 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
5 Hb_000581_070 0.003992507 - - -
6 Hb_007668_030 0.0045250484 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
7 Hb_000832_260 0.0047634311 - - Protein gar2, putative [Ricinus communis]
8 Hb_109050_010 0.0047634311 - - -
9 Hb_001821_040 0.0076807154 - - -
10 Hb_007120_110 0.0077802285 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_000698_050 0.0088681556 - - -
12 Hb_001461_030 0.0098732294 - - -
13 Hb_002189_020 0.0098807628 - - conserved hypothetical protein [Ricinus communis]
14 Hb_060997_010 0.0098807628 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
15 Hb_024415_010 0.0103869225 - - -
16 Hb_027970_010 0.0110693618 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_004048_040 0.0116053037 - - -
18 Hb_000573_080 0.0119511959 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
19 Hb_047399_010 0.012793388 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
20 Hb_100500_010 0.0135739846 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]

Gene co-expression network

sample Hb_001988_040 Hb_001988_040 Hb_060300_010 Hb_060300_010 Hb_001988_040--Hb_060300_010 Hb_011980_030 Hb_011980_030 Hb_001988_040--Hb_011980_030 Hb_098361_010 Hb_098361_010 Hb_001988_040--Hb_098361_010 Hb_000581_070 Hb_000581_070 Hb_001988_040--Hb_000581_070 Hb_007668_030 Hb_007668_030 Hb_001988_040--Hb_007668_030 Hb_000832_260 Hb_000832_260 Hb_001988_040--Hb_000832_260 Hb_060300_010--Hb_011980_030 Hb_060300_010--Hb_098361_010 Hb_060300_010--Hb_000832_260 Hb_109050_010 Hb_109050_010 Hb_060300_010--Hb_109050_010 Hb_060300_010--Hb_000581_070 Hb_011980_030--Hb_000832_260 Hb_011980_030--Hb_109050_010 Hb_001821_040 Hb_001821_040 Hb_011980_030--Hb_001821_040 Hb_000698_050 Hb_000698_050 Hb_011980_030--Hb_000698_050 Hb_098361_010--Hb_000581_070 Hb_098361_010--Hb_007668_030 Hb_007120_110 Hb_007120_110 Hb_098361_010--Hb_007120_110 Hb_001461_030 Hb_001461_030 Hb_098361_010--Hb_001461_030 Hb_000581_070--Hb_007668_030 Hb_000581_070--Hb_007120_110 Hb_000581_070--Hb_001461_030 Hb_007668_030--Hb_007120_110 Hb_007668_030--Hb_060300_010 Hb_007668_030--Hb_001461_030 Hb_000832_260--Hb_109050_010 Hb_000832_260--Hb_001821_040 Hb_000832_260--Hb_000698_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0465783 0.207097

CAGE analysis