Hb_001821_040

Information

Type -
Description -
Location Contig1821: 37834-38371
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0044464
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_040 0.0 - - -
2 Hb_000698_050 0.0011875037 - - -
3 Hb_002189_020 0.0022001782 - - conserved hypothetical protein [Ricinus communis]
4 Hb_060997_010 0.0022001782 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
5 Hb_000832_260 0.0029173688 - - Protein gar2, putative [Ricinus communis]
6 Hb_109050_010 0.0029173688 - - -
7 Hb_027970_010 0.0033888718 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_011980_030 0.0046468975 - - conserved hypothetical protein [Ricinus communis]
9 Hb_186580_020 0.0059664448 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
10 Hb_060300_010 0.0070895244 - - hypothetical protein F383_16817 [Gossypium arboreum]
11 Hb_001988_040 0.0076807154 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
12 Hb_085603_010 0.0096283418 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
13 Hb_098361_010 0.0112141829 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
14 Hb_062634_010 0.0112535941 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
15 Hb_000581_070 0.0116729346 - - -
16 Hb_007668_030 0.0122054224 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
17 Hb_007120_110 0.015460196 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
18 Hb_001227_050 0.0157977015 - - -
19 Hb_020367_060 0.0157977015 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
20 Hb_001461_030 0.0175528631 - - -

Gene co-expression network

sample Hb_001821_040 Hb_001821_040 Hb_000698_050 Hb_000698_050 Hb_001821_040--Hb_000698_050 Hb_002189_020 Hb_002189_020 Hb_001821_040--Hb_002189_020 Hb_060997_010 Hb_060997_010 Hb_001821_040--Hb_060997_010 Hb_000832_260 Hb_000832_260 Hb_001821_040--Hb_000832_260 Hb_109050_010 Hb_109050_010 Hb_001821_040--Hb_109050_010 Hb_027970_010 Hb_027970_010 Hb_001821_040--Hb_027970_010 Hb_000698_050--Hb_002189_020 Hb_000698_050--Hb_060997_010 Hb_000698_050--Hb_027970_010 Hb_000698_050--Hb_000832_260 Hb_000698_050--Hb_109050_010 Hb_002189_020--Hb_060997_010 Hb_002189_020--Hb_027970_010 Hb_186580_020 Hb_186580_020 Hb_002189_020--Hb_186580_020 Hb_002189_020--Hb_000832_260 Hb_002189_020--Hb_060997_010 Hb_002189_020--Hb_027970_010 Hb_002189_020--Hb_186580_020 Hb_002189_020--Hb_000832_260 Hb_000832_260--Hb_109050_010 Hb_011980_030 Hb_011980_030 Hb_000832_260--Hb_011980_030 Hb_060300_010 Hb_060300_010 Hb_000832_260--Hb_060300_010 Hb_001988_040 Hb_001988_040 Hb_000832_260--Hb_001988_040 Hb_000832_260--Hb_109050_010 Hb_000832_260--Hb_011980_030 Hb_000832_260--Hb_060300_010 Hb_000832_260--Hb_001988_040 Hb_027970_010--Hb_060997_010 Hb_027970_010--Hb_186580_020 Hb_085603_010 Hb_085603_010 Hb_027970_010--Hb_085603_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0581407 0.246791

CAGE analysis