Hb_002189_020

Information

Type -
Description -
Location Contig2189: 31195-31611
Sequence    

Annotation

kegg
ID rcu:RCOM_1318690
description hypothetical protein
nr
ID XP_002529264.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002189_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_060997_010 0.0 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
3 Hb_000698_050 0.0010126766 - - -
4 Hb_027970_010 0.0011887003 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
5 Hb_001821_040 0.0022001782 - - -
6 Hb_186580_020 0.0037663044 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
7 Hb_000832_260 0.0051175215 - - Protein gar2, putative [Ricinus communis]
8 Hb_109050_010 0.0051175215 - - -
9 Hb_011980_030 0.0068470211 - - conserved hypothetical protein [Ricinus communis]
10 Hb_085603_010 0.0074282832 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
11 Hb_062634_010 0.0090535858 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
12 Hb_060300_010 0.0092895892 - - hypothetical protein F383_16817 [Gossypium arboreum]
13 Hb_001988_040 0.0098807628 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
14 Hb_098361_010 0.0134141 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
15 Hb_001227_050 0.0135978787 - - -
16 Hb_020367_060 0.0135978787 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
17 Hb_000581_070 0.0138728315 - - -
18 Hb_007668_030 0.0144052949 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
19 Hb_007120_110 0.0176598966 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
20 Hb_029344_010 0.0189803249 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_002189_020 Hb_002189_020 Hb_060997_010 Hb_060997_010 Hb_002189_020--Hb_060997_010 Hb_000698_050 Hb_000698_050 Hb_002189_020--Hb_000698_050 Hb_027970_010 Hb_027970_010 Hb_002189_020--Hb_027970_010 Hb_001821_040 Hb_001821_040 Hb_002189_020--Hb_001821_040 Hb_186580_020 Hb_186580_020 Hb_002189_020--Hb_186580_020 Hb_000832_260 Hb_000832_260 Hb_002189_020--Hb_000832_260 Hb_002189_020--Hb_060997_010 Hb_002189_020--Hb_000698_050 Hb_002189_020--Hb_027970_010 Hb_002189_020--Hb_001821_040 Hb_002189_020--Hb_186580_020 Hb_002189_020--Hb_000832_260 Hb_000698_050--Hb_060997_010 Hb_000698_050--Hb_001821_040 Hb_000698_050--Hb_027970_010 Hb_000698_050--Hb_000832_260 Hb_109050_010 Hb_109050_010 Hb_000698_050--Hb_109050_010 Hb_027970_010--Hb_060997_010 Hb_027970_010--Hb_186580_020 Hb_027970_010--Hb_001821_040 Hb_085603_010 Hb_085603_010 Hb_027970_010--Hb_085603_010 Hb_001821_040--Hb_060997_010 Hb_001821_040--Hb_000832_260 Hb_001821_040--Hb_109050_010 Hb_186580_020--Hb_085603_010 Hb_186580_020--Hb_060997_010 Hb_186580_020--Hb_000698_050 Hb_062634_010 Hb_062634_010 Hb_186580_020--Hb_062634_010 Hb_000832_260--Hb_109050_010 Hb_011980_030 Hb_011980_030 Hb_000832_260--Hb_011980_030 Hb_060300_010 Hb_060300_010 Hb_000832_260--Hb_060300_010 Hb_001988_040 Hb_001988_040 Hb_000832_260--Hb_001988_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0615318 0.25777

CAGE analysis