Hb_186580_020

Information

Type -
Description -
Location Contig186580: 9327-9725
Sequence    

Annotation

kegg
ID mdm:103426965
description uncharacterized LOC103426965
nr
ID XP_008363264.1
description PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A067FQI0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043491mg PE=4 SV=1
Gene Ontology
ID GO:0046872
description PREDICTED: uncharacterized protein LOC105037131, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186580_020 0.0 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
2 Hb_027970_010 0.0025776129 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_085603_010 0.0036620559 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
4 Hb_002189_020 0.0037663044 - - conserved hypothetical protein [Ricinus communis]
5 Hb_060997_010 0.0037663044 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
6 Hb_000698_050 0.0047789671 - - -
7 Hb_062634_010 0.0052874166 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
8 Hb_001821_040 0.0059664448 - - -
9 Hb_000832_260 0.0088836942 - - Protein gar2, putative [Ricinus communis]
10 Hb_109050_010 0.0088836942 - - -
11 Hb_001227_050 0.009831949 - - -
12 Hb_020367_060 0.009831949 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
13 Hb_011980_030 0.0106131144 - - conserved hypothetical protein [Ricinus communis]
14 Hb_060300_010 0.0130555397 - - hypothetical protein F383_16817 [Gossypium arboreum]
15 Hb_001988_040 0.0136466733 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
16 Hb_029344_010 0.0152148224 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_098361_010 0.0171797269 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
18 Hb_000581_070 0.0176384159 - - -
19 Hb_007668_030 0.0181708284 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
20 Hb_146757_010 0.0189043122 - - -

Gene co-expression network

sample Hb_186580_020 Hb_186580_020 Hb_027970_010 Hb_027970_010 Hb_186580_020--Hb_027970_010 Hb_085603_010 Hb_085603_010 Hb_186580_020--Hb_085603_010 Hb_002189_020 Hb_002189_020 Hb_186580_020--Hb_002189_020 Hb_060997_010 Hb_060997_010 Hb_186580_020--Hb_060997_010 Hb_000698_050 Hb_000698_050 Hb_186580_020--Hb_000698_050 Hb_062634_010 Hb_062634_010 Hb_186580_020--Hb_062634_010 Hb_027970_010--Hb_002189_020 Hb_027970_010--Hb_060997_010 Hb_027970_010--Hb_000698_050 Hb_001821_040 Hb_001821_040 Hb_027970_010--Hb_001821_040 Hb_027970_010--Hb_085603_010 Hb_085603_010--Hb_062634_010 Hb_001227_050 Hb_001227_050 Hb_085603_010--Hb_001227_050 Hb_020367_060 Hb_020367_060 Hb_085603_010--Hb_020367_060 Hb_085603_010--Hb_002189_020 Hb_002189_020--Hb_060997_010 Hb_002189_020--Hb_000698_050 Hb_002189_020--Hb_001821_040 Hb_000832_260 Hb_000832_260 Hb_002189_020--Hb_000832_260 Hb_002189_020--Hb_060997_010 Hb_002189_020--Hb_000698_050 Hb_002189_020--Hb_001821_040 Hb_002189_020--Hb_000832_260 Hb_000698_050--Hb_060997_010 Hb_000698_050--Hb_001821_040 Hb_000698_050--Hb_000832_260 Hb_109050_010 Hb_109050_010 Hb_000698_050--Hb_109050_010 Hb_062634_010--Hb_001227_050 Hb_062634_010--Hb_020367_060 Hb_062634_010--Hb_027970_010 Hb_062634_010--Hb_002189_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0674258 0.276202

CAGE analysis