Hb_000832_260

Information

Type -
Description -
Location Contig832: 243961-246957
Sequence    

Annotation

kegg
ID rcu:RCOM_0190490
description Protein gar2, putative
nr
ID XP_002531981.1
description Protein gar2, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T163
description Protein gar2, putative OS=Ricinus communis GN=RCOM_0190490 PE=4 SV=1
Gene Ontology
ID GO:0005488
description protein gar2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_260 0.0 - - Protein gar2, putative [Ricinus communis]
2 Hb_109050_010 0.0 - - -
3 Hb_011980_030 0.0017295471 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001821_040 0.0029173688 - - -
5 Hb_000698_050 0.0041048614 - - -
6 Hb_060300_010 0.0041722239 - - hypothetical protein F383_16817 [Gossypium arboreum]
7 Hb_001988_040 0.0047634311 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
8 Hb_002189_020 0.0051175215 - - conserved hypothetical protein [Ricinus communis]
9 Hb_060997_010 0.0051175215 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
10 Hb_027970_010 0.0063061922 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
11 Hb_098361_010 0.0082970303 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
12 Hb_000581_070 0.0087558035 - - -
13 Hb_186580_020 0.0088836942 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
14 Hb_007668_030 0.0092883175 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
15 Hb_007120_110 0.0125432812 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
16 Hb_085603_010 0.0125454403 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
17 Hb_062634_010 0.014170607 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
18 Hb_001461_030 0.0146360981 - - -
19 Hb_024415_010 0.0151497406 - - -
20 Hb_004048_040 0.0163679931 - - -

Gene co-expression network

sample Hb_000832_260 Hb_000832_260 Hb_109050_010 Hb_109050_010 Hb_000832_260--Hb_109050_010 Hb_011980_030 Hb_011980_030 Hb_000832_260--Hb_011980_030 Hb_001821_040 Hb_001821_040 Hb_000832_260--Hb_001821_040 Hb_000698_050 Hb_000698_050 Hb_000832_260--Hb_000698_050 Hb_060300_010 Hb_060300_010 Hb_000832_260--Hb_060300_010 Hb_001988_040 Hb_001988_040 Hb_000832_260--Hb_001988_040 Hb_000832_260--Hb_109050_010 Hb_000832_260--Hb_011980_030 Hb_000832_260--Hb_001821_040 Hb_000832_260--Hb_000698_050 Hb_000832_260--Hb_060300_010 Hb_000832_260--Hb_001988_040 Hb_011980_030--Hb_109050_010 Hb_011980_030--Hb_060300_010 Hb_011980_030--Hb_001988_040 Hb_011980_030--Hb_001821_040 Hb_011980_030--Hb_000698_050 Hb_001821_040--Hb_000698_050 Hb_002189_020 Hb_002189_020 Hb_001821_040--Hb_002189_020 Hb_060997_010 Hb_060997_010 Hb_001821_040--Hb_060997_010 Hb_001821_040--Hb_109050_010 Hb_027970_010 Hb_027970_010 Hb_001821_040--Hb_027970_010 Hb_000698_050--Hb_002189_020 Hb_000698_050--Hb_060997_010 Hb_000698_050--Hb_027970_010 Hb_000698_050--Hb_109050_010 Hb_060300_010--Hb_001988_040 Hb_098361_010 Hb_098361_010 Hb_060300_010--Hb_098361_010 Hb_060300_010--Hb_109050_010 Hb_000581_070 Hb_000581_070 Hb_060300_010--Hb_000581_070 Hb_001988_040--Hb_098361_010 Hb_001988_040--Hb_000581_070 Hb_007668_030 Hb_007668_030 Hb_001988_040--Hb_007668_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0536991 0.23197

CAGE analysis